Result of FASTA (ccds) for
pF1KE0155
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0155, 243 aa
1>>>pF1KE0155 243 - 243 aa - 243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8738+/-0.000757; mu= 16.7988+/- 0.046
mean_var=63.2589+/-12.940, 0's: 0 Z-trim(108.2): 15 B-trim: 0 in 0/47
Lambda= 0.161255
statistics sampled from 10052 (10060) to 10052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.309), width: 16
Scan time: 2.150
The best scores are: opt bits E(32554)
CCDS45306.1 SCAMP5 gene_id:192683|Hs108|chr15 ( 235) 1600 380.5 5.5e-106
CCDS45903.1 SCAMP4 gene_id:113178|Hs108|chr19 ( 229) 976 235.3 2.7e-62
CCDS78025.1 SCAMP1 gene_id:9522|Hs108|chr5 ( 312) 754 183.7 1.2e-46
CCDS75264.1 SCAMP1 gene_id:9522|Hs108|chr5 ( 338) 754 183.8 1.3e-46
CCDS1106.1 SCAMP3 gene_id:10067|Hs108|chr1 ( 321) 751 183.0 2e-46
CCDS1105.1 SCAMP3 gene_id:10067|Hs108|chr1 ( 347) 751 183.1 2.1e-46
CCDS10271.1 SCAMP2 gene_id:10066|Hs108|chr15 ( 329) 747 182.1 3.9e-46
>>CCDS45306.1 SCAMP5 gene_id:192683|Hs108|chr15 (235 aa)
initn: 989 init1: 945 opt: 1600 Z-score: 2016.3 bits: 380.5 E(32554): 5.5e-106
Smith-Waterman score: 1600; 96.7% identity (96.7% similar) in 243 aa overlap (1-243:1-235)
10 20 30 40 50 60
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IQAVGIPGWGVCPTLASSCSGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMV
:::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS45 IQAVGIPGWGVC--------GWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMV
130 140 150 160 170
190 200 210 220 230 240
pF1KE0 HKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 HKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYS
180 190 200 210 220 230
pF1KE0 NEM
:::
CCDS45 NEM
>>CCDS45903.1 SCAMP4 gene_id:113178|Hs108|chr19 (229 aa)
initn: 978 init1: 705 opt: 976 Z-score: 1231.9 bits: 235.3 E(32554): 2.7e-62
Smith-Waterman score: 981; 55.8% identity (79.8% similar) in 242 aa overlap (1-242:1-227)
10 20 30 40 50 60
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLA
:.:: :::::::::::.::::::.: .:: .: ..::.: :::. .::.:::..:::
CCDS45 MSEKENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCATLGVNLIACLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI
: ::::..:::::::.::.:::::.:::::::.::::..::::.:::::: : ::.:...
CCDS45 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 IQAVGIPGWGVCPTLASSCSGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMV
:::.:. :::.: ::...:.:: . :.:::::.:..::.: :.. ::. :
CCDS45 IQAIGFSGWGAC--------GWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKV
130 140 150 160 170
190 200 210 220 230 240
pF1KE0 HKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYS
:..:::.::::.::: ::.::.:.:: ..: : : . :. : ..:.: :
CCDS45 HRIYRGAGGSFQKAQTEWNTGTWRNPPSREAQYNNFSGNSL-----PE--YPTVPSYPGS
180 190 200 210 220
pF1KE0 NEM
..
CCDS45 GQWP
>>CCDS78025.1 SCAMP1 gene_id:9522|Hs108|chr5 (312 aa)
initn: 796 init1: 315 opt: 754 Z-score: 950.8 bits: 183.7 E(32554): 1.2e-46
Smith-Waterman score: 754; 47.0% identity (79.5% similar) in 219 aa overlap (6-223:92-302)
10 20 30
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVS
::.::::. .:. ::::::: .::: . .
CCDS78 LKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQK
70 80 90 100 110 120
40 50 60 70 80 90
pF1KE0 MTKRLYYLWMLNSVTLAVNLVGCLAWL-IGGGGATNFGLAFLWLILFTPCSYVCWFRPIY
.: .:::::...::: .:. :::::. . .. :..:::..::..::::::.:::.::.:
CCDS78 TVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLY
130 140 150 160 170 180
100 110 120 130 140 150
pF1KE0 KAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPTLASSCSGWIATISFFGTNIG
::..:::: :..:::... :... ..::.:. .:: : :::.... .. ::
CCDS78 GAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNC--------GWISSLTGLNQNIP
190 200 210 220 230
160 170 180 190 200 210
pF1KE0 SAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQN
...:.: ...::. ::.:.. .. :: .:: .:.:: :::.:..::. .: :: :: :
CCDS78 VGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQTAAAN
240 250 260 270 280 290
220 230 240
pF1KE0 AAMGAAQGAMNQPQTQYSATPNYTYSNEM
:: ::..:
CCDS78 AASTAASSAAQNAFKGNQI
300 310
>>CCDS75264.1 SCAMP1 gene_id:9522|Hs108|chr5 (338 aa)
initn: 796 init1: 315 opt: 754 Z-score: 950.4 bits: 183.8 E(32554): 1.3e-46
Smith-Waterman score: 754; 47.0% identity (79.5% similar) in 219 aa overlap (6-223:118-328)
10 20 30
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVS
::.::::. .:. ::::::: .::: . .
CCDS75 LKRQEELERKAAELDRREREMQNLSQHGRKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQK
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE0 MTKRLYYLWMLNSVTLAVNLVGCLAWL-IGGGGATNFGLAFLWLILFTPCSYVCWFRPIY
.: .:::::...::: .:. :::::. . .. :..:::..::..::::::.:::.::.:
CCDS75 TVKLMYYLWMFHAVTLFLNIFGCLAWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLY
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 KAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPTLASSCSGWIATISFFGTNIG
::..:::: :..:::... :... ..::.:. .:: : :::.... .. ::
CCDS75 GAFRSDSSFRFFVFFFVYICQFAVHVLQAAGFHNWGNC--------GWISSLTGLNQNIP
210 220 230 240 250
160 170 180 190 200 210
pF1KE0 SAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQN
...:.: ...::. ::.:.. .. :: .:: .:.:: :::.:..::. .: :: :: :
CCDS75 VGIMMIIIAALFTASAVISLVMFKKVHGLYRTTGASFEKAQQEFATGVMSNKTVQTAAAN
260 270 280 290 300 310
220 230 240
pF1KE0 AAMGAAQGAMNQPQTQYSATPNYTYSNEM
:: ::..:
CCDS75 AASTAASSAAQNAFKGNQI
320 330
>>CCDS1106.1 SCAMP3 gene_id:10067|Hs108|chr1 (321 aa)
initn: 787 init1: 332 opt: 751 Z-score: 946.9 bits: 183.0 E(32554): 2e-46
Smith-Waterman score: 751; 44.9% identity (79.7% similar) in 227 aa overlap (2-227:103-321)
10 20 30
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPP
: . ::.::::.: :..:::.::. .::
CCDS11 LLKKQEELNRKAEELDRRERELQHAALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQ
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE0 QHVSMTKRLYYLWMLNSVTLAVNLVGCLA-WLIGGGGATNFGLAFLWLILFTPCSYVCWF
. . .. .::::: ....: .:...::: . . .....:::..::..::::::.:::.
CCDS11 EFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETNNGAGFGLSILWVLLFTPCSFVCWY
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE0 RPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPTLASSCSGWIATISFFG
::.::::..::::.:..::: :..: :. ..::.:::::: ::::...
CCDS11 RPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQAIGIPGWGF--------SGWISALVVPK
200 210 220 230 240
160 170 180 190 200 210
pF1KE0 TNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQ
: . .:.::. ...:: .::.... :. .:..:: .:.::.:::.:...:...:: :.
CCDS11 GNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGASFQKAQQEFAAGVFSNPAVRT
250 260 270 280 290 300
220 230 240
pF1KE0 AAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM
:: ::: :::..:. :
CCDS11 AAANAAAGAAENAFRAP
310 320
>>CCDS1105.1 SCAMP3 gene_id:10067|Hs108|chr1 (347 aa)
initn: 787 init1: 332 opt: 751 Z-score: 946.4 bits: 183.1 E(32554): 2.1e-46
Smith-Waterman score: 751; 44.9% identity (79.7% similar) in 227 aa overlap (2-227:129-347)
10 20 30
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPP
: . ::.::::.: :..:::.::. .::
CCDS11 LLKKQEELNRKAEELDRRERELQHAALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQ
100 110 120 130 140 150
40 50 60 70 80 90
pF1KE0 QHVSMTKRLYYLWMLNSVTLAVNLVGCLA-WLIGGGGATNFGLAFLWLILFTPCSYVCWF
. . .. .::::: ....: .:...::: . . .....:::..::..::::::.:::.
CCDS11 EFQKTVSTMYYLWMCSTLALLLNFLACLASFCVETNNGAGFGLSILWVLLFTPCSFVCWY
160 170 180 190 200 210
100 110 120 130 140 150
pF1KE0 RPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPTLASSCSGWIATISFFG
::.::::..::::.:..::: :..: :. ..::.:::::: ::::...
CCDS11 RPMYKAFRSDSSFNFFVFFFIFFVQDVLFVLQAIGIPGWGF--------SGWISALVVPK
220 230 240 250 260 270
160 170 180 190 200 210
pF1KE0 TNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQ
: . .:.::. ...:: .::.... :. .:..:: .:.::.:::.:...:...:: :.
CCDS11 GNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYRRTGASFQKAQQEFAAGVFSNPAVRT
280 290 300 310 320 330
220 230 240
pF1KE0 AAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM
:: ::: :::..:. :
CCDS11 AAANAAAGAAENAFRAP
340
>>CCDS10271.1 SCAMP2 gene_id:10066|Hs108|chr15 (329 aa)
initn: 744 init1: 308 opt: 747 Z-score: 941.7 bits: 182.1 E(32554): 3.9e-46
Smith-Waterman score: 747; 49.3% identity (81.3% similar) in 219 aa overlap (6-222:118-328)
10 20 30
pF1KE0 MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVS
::.::::.. :.:::::::: ..:: ..
CCDS10 QQEELDRKAAELERKERELQNTVANLHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQR
90 100 110 120 130 140
40 50 60 70 80 90
pF1KE0 MTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGG-ATNFGLAFLWLILFTPCSYVCWFRPIY
. : :::::::.:::: .::..::::. :... ...:::..::...::::...::.::::
CCDS10 ICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIY
150 160 170 180 190 200
100 110 120 130 140 150
pF1KE0 KAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPTLASSCSGWIATISFFGTN-I
:::..:.::::..:::.:. :. : ::: ::::: : :::::..: . .. .
CCDS10 KAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIPGLGD--------SGWIAALSTLDNHSL
210 220 230 240 250
160 170 180 190 200 210
pF1KE0 GSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQ
. .:.:.. . .::. ::.: . :. ::..:: .:.::..::::.. : ... ..::.
CCDS10 AISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQAQEEFSQGIFSSRTFHRAAS
260 270 280 290 300 310
220 230 240
pF1KE0 NAAMGAAQGAMNQPQTQYSATPNYTYSNEM
.::.:: ::
CCDS10 SAAQGAFQGN
320
243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:44:59 2016 done: Thu Nov 3 23:44:59 2016
Total Scan time: 2.150 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]