FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0153, 346 aa
  1>>>pF1KE0153 346 - 346 aa - 346 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0695+/-0.000345; mu= 18.1672+/- 0.022
 mean_var=72.3155+/-14.823, 0's: 0 Z-trim(114.1): 9  B-trim: 1262 in 1/51
 Lambda= 0.150820
 statistics sampled from 23716 (23718) to 23716 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.278), width:  16
 Scan time:  8.050

The best scores are:                                      opt bits E(85289)
NP_060337 (OMIM: 616614) histone PARylation factor ( 346) 2323 514.6 1.3e-145
XP_016863821 (OMIM: 616614) PREDICTED: UPF0609 pro ( 367) 2064 458.3 1.2e-128


>>NP_060337 (OMIM: 616614) histone PARylation factor 1 [  (346 aa)
 initn: 2323 init1: 2323 opt: 2323  Z-score: 2735.5  bits: 514.6 E(85289): 1.3e-145
Smith-Waterman score: 2323; 99.7% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KE0 MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
NP_060 GDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREITDKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCY
              250       260       270       280       290       300

              310       320       330       340      
pF1KE0 GSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA
              310       320       330       340      

>>XP_016863821 (OMIM: 616614) PREDICTED: UPF0609 protein  (367 aa)
 initn: 2053 init1: 2053 opt: 2064  Z-score: 2430.5  bits: 458.3 E(85289): 1.2e-128
Smith-Waterman score: 2064; 97.2% identity (98.4% similar) in 316 aa overlap (1-316:1-315)

               10        20        30        40        50        60
pF1KE0 MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
XP_016 GDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREITDKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCY
              250       260       270       280       290       300

              310       320       330       340                    
pF1KE0 GSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA              
       :::  .:.  .::: :                                            
XP_016 GSHVSKKTL-HLLPTATPPSSPRDIHPHMNTCTFIPPNSSRGKTGIQLVFQNEVFEVIFF
               310       320       330       340       350         




346 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:49:31 2016 done: Thu Nov  3 23:49:32 2016
 Total Scan time:  8.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]