FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0153, 346 aa
  1>>>pF1KE0153 346 - 346 aa - 346 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4323+/-0.00081; mu= 15.8155+/- 0.049
 mean_var=68.7373+/-13.615, 0's: 0 Z-trim(107.5): 15  B-trim: 0 in 0/50
 Lambda= 0.154696
 statistics sampled from 9593 (9594) to 9593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.295), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS3813.1 HPF1 gene_id:54969|Hs108|chr4           ( 346) 2323 527.3 7.3e-150


>>CCDS3813.1 HPF1 gene_id:54969|Hs108|chr4                (346 aa)
 initn: 2323 init1: 2323 opt: 2323  Z-score: 2804.0  bits: 527.3 E(32554): 7.3e-150
Smith-Waterman score: 2323; 99.7% identity (100.0% similar) in 346 aa overlap (1-346:1-346)

               10        20        30        40        50        60
pF1KE0 MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MVGGGGKRRPGGEGPQCEKTTDVKKSKFCEADVSSDLRKEVENHYKLSLPEDFYHFWKFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 EELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 EELDPEKPSDSLSASLGLQLVGPYDILAGKHKTKKKSTGLNFNLHWRFYYDPPEFQTIII
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLKEITDKK
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::
CCDS38 GDNKTQYHMGYFRDSPDEFPVYVGINEAKKNCIIVPNGDNVFAAVKLFLTKKLREITDKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 KINLLKNIDEKLTEAARELGYSLEQRTVKMKQRDKKVVTKTFHGAGLVVPVDKNDVGYRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 LPETDADLKRICKTIVEAASDEERLKAFAPIQEMMTFVQFANDECDYGMGLELGMDLFCY
              250       260       270       280       290       300

              310       320       330       340      
pF1KE0 GSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 GSHYFHKVAGQLLPLAYNLLKRNLFAEIIEEHLANRSQENIDQLAA
              310       320       330       340      




346 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 23:49:30 2016 done: Thu Nov  3 23:49:31 2016
 Total Scan time:  2.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]