Result of FASTA (ccds) for
pF1KE0149
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0149, 156 aa
1>>>pF1KE0149 156 - 156 aa - 156 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2260+/-0.000732; mu= -1.6003+/- 0.045
mean_var=249.1431+/-49.804, 0's: 0 Z-trim(118.4): 6 B-trim: 12 in 1/55
Lambda= 0.081255
statistics sampled from 19357 (19363) to 19357 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.595), width: 16
Scan time: 2.140
The best scores are: opt bits E(32554)
CCDS35199.1 VCX3A gene_id:51481|Hs108|chrX ( 186) 982 126.1 1.1e-29
CCDS48077.2 VCX3B gene_id:425054|Hs108|chrX ( 246) 976 125.5 2.1e-29
CCDS14128.1 VCX gene_id:26609|Hs108|chrX ( 206) 970 124.7 3.1e-29
CCDS35200.1 VCX2 gene_id:51480|Hs108|chrX ( 139) 817 106.6 5.7e-24
CCDS56617.1 VCY gene_id:9084|Hs108|chrY ( 125) 730 96.4 6.2e-21
CCDS56618.1 VCY1B gene_id:353513|Hs108|chrY ( 125) 730 96.4 6.2e-21
>>CCDS35199.1 VCX3A gene_id:51481|Hs108|chrX (186 aa)
initn: 982 init1: 982 opt: 982 Z-score: 646.7 bits: 126.1 E(32554): 1.1e-29
Smith-Waterman score: 982; 98.7% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
CCDS35 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEM
130 140 150 160 170 180
CCDS35 EELPSV
>>CCDS48077.2 VCX3B gene_id:425054|Hs108|chrX (246 aa)
initn: 976 init1: 976 opt: 976 Z-score: 641.2 bits: 125.5 E(32554): 2.1e-29
Smith-Waterman score: 976; 98.0% identity (99.3% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MSPKPRASGPPAKAKEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
CCDS48 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESEVEEPLSQESQV
130 140 150 160 170 180
CCDS48 EEPLSQESEVEEPLSQESQVEEPLSQESEMEEPLSQESQVEEPLSQESEMEEPLSQESEM
190 200 210 220 230 240
>>CCDS14128.1 VCX gene_id:26609|Hs108|chrX (206 aa)
initn: 970 init1: 970 opt: 970 Z-score: 638.5 bits: 124.7 E(32554): 3.1e-29
Smith-Waterman score: 970; 97.4% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::.:::::::::::::::::::::::::::::::::::::.::::::::::::
CCDS14 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQEAELEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::::::::::::::::::::::::::..::
CCDS14 EEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEVEEPLSQESQVEEPLSQESEM
130 140 150 160 170 180
CCDS14 EEPLSQESQVEEPPSQESEMEELPSV
190 200
>>CCDS35200.1 VCX2 gene_id:51480|Hs108|chrX (139 aa)
initn: 949 init1: 811 opt: 817 Z-score: 543.8 bits: 106.6 E(32554): 5.7e-24
Smith-Waterman score: 817; 89.2% identity (94.2% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::.:::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS35 AVTAPEAESAPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESEVEEPLSQESEV
70 80 90 100 110 120
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
::::. :.:. ..
CCDS35 EEPLTVWMASFSPVSESTD
130
>>CCDS56617.1 VCY gene_id:9084|Hs108|chrY (125 aa)
initn: 846 init1: 727 opt: 730 Z-score: 489.3 bits: 96.4 E(32554): 6.2e-21
Smith-Waterman score: 730; 89.6% identity (94.4% similar) in 125 aa overlap (1-125:1-124)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
:::::::::::::: :.:::::::::::: :::::::::.::.::: :::::::::::::
CCDS56 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::. ..
CCDS56 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK-GRP
70 80 90 100 110
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
:::
CCDS56 STPLSP
120
>>CCDS56618.1 VCY1B gene_id:353513|Hs108|chrY (125 aa)
initn: 846 init1: 727 opt: 730 Z-score: 489.3 bits: 96.4 E(32554): 6.2e-21
Smith-Waterman score: 730; 89.6% identity (94.4% similar) in 125 aa overlap (1-125:1-124)
10 20 30 40 50 60
pF1KE0 MSPKPRASGPPAKATEAGKRKSSSQPSPSDPKKKTTKVAKKGKAVRRGRRGKKGAATKMA
:::::::::::::: :.:::::::::::: :::::::::.::.::: :::::::::::::
CCDS56 MSPKPRASGPPAKAKETGKRKSSSQPSPSGPKKKTTKVAEKGEAVRGGRRGKKGAATKMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSQESEV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::. ..
CCDS56 AVTAPEAESGPAAPGPSDQPSQELPQHELPPEEPVSEGTQHDPLSQESELEEPLSK-GRP
70 80 90 100 110
130 140 150
pF1KE0 EEPLSQESQVEEPLSQESEVEEPLSQESEMEELPSV
:::
CCDS56 STPLSP
120
156 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:14:13 2016 done: Fri Nov 4 00:14:14 2016
Total Scan time: 2.140 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]