Result of FASTA (ccds) for
pF1KE0148
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0148, 226 aa
1>>>pF1KE0148 226 - 226 aa - 226 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2982+/-0.000759; mu= 13.9836+/- 0.046
mean_var=65.4195+/-13.328, 0's: 0 Z-trim(108.2): 23 B-trim: 0 in 0/50
Lambda= 0.158570
statistics sampled from 10063 (10083) to 10063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.31), width: 16
Scan time: 2.230
The best scores are: opt bits E(32554)
CCDS5877.1 GSTK1 gene_id:373156|Hs108|chr7 ( 226) 1517 355.4 1.7e-98
CCDS47731.1 GSTK1 gene_id:373156|Hs108|chr7 ( 214) 882 210.2 8.6e-55
CCDS47730.1 GSTK1 gene_id:373156|Hs108|chr7 ( 282) 882 210.2 1.1e-54
CCDS47732.1 GSTK1 gene_id:373156|Hs108|chr7 ( 183) 877 209.0 1.7e-54
>>CCDS5877.1 GSTK1 gene_id:373156|Hs108|chr7 (226 aa)
initn: 1517 init1: 1517 opt: 1517 Z-score: 1881.9 bits: 355.4 E(32554): 1.7e-98
Smith-Waterman score: 1517; 99.6% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KE0 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIAAPKVKNQLKETTEAACRYGA
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS58 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA
130 140 150 160 170 180
190 200 210 220
pF1KE0 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
190 200 210 220
>>CCDS47731.1 GSTK1 gene_id:373156|Hs108|chr7 (214 aa)
initn: 1429 init1: 882 opt: 882 Z-score: 1097.2 bits: 210.2 E(32554): 8.6e-55
Smith-Waterman score: 1409; 94.2% identity (94.7% similar) in 226 aa overlap (1-226:1-214)
10 20 30 40 50 60
pF1KE0 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIAAPKVKNQLKETTEAACRYGA
:::::::: ::::::::::::::::::::.:::::::::::::::::::
CCDS47 LWMRVWSR------------AAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA
130 140 150 160
190 200 210 220
pF1KE0 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
170 180 190 200 210
>>CCDS47730.1 GSTK1 gene_id:373156|Hs108|chr7 (282 aa)
initn: 882 init1: 882 opt: 882 Z-score: 1095.4 bits: 210.2 E(32554): 1.1e-54
Smith-Waterman score: 1228; 77.9% identity (78.3% similar) in 258 aa overlap (1-202:1-258)
10 20 30 40 50 60
pF1KE0 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
70 80 90 100 110 120
pF1KE0 LWMRVWSR----------------------------------------------------
::::::::
CCDS47 LWMRVWSRVSVGLWESSGRTLDDFLTFPRHVFRVMILPPPGGSTVLPVTPLSPHRLPAVF
130 140 150 160 170 180
130 140 150 160 170 180
pF1KE0 ----NEDITEPQSILAAAEKAGMSAEQAQGLLEKIAAPKVKNQLKETTEAACRYGAFGLP
::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
CCDS47 SSSQNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLP
190 200 210 220 230 240
190 200 210 220
pF1KE0 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
::::::::::::::::::
CCDS47 ITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
250 260 270 280
>>CCDS47732.1 GSTK1 gene_id:373156|Hs108|chr7 (183 aa)
initn: 872 init1: 872 opt: 877 Z-score: 1092.0 bits: 209.0 E(32554): 1.7e-54
Smith-Waterman score: 1122; 80.5% identity (81.0% similar) in 226 aa overlap (1-226:1-183)
10 20 30 40 50 60
pF1KE0 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MGPLPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSG--------
10 20 30 40 50
70 80 90 100 110 120
pF1KE0 RKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRE
:::::::::::::::::::::::::
CCDS47 -----------------------------------SLSAMRFLTAVNLEHPEMLEKASRE
60 70
130 140 150 160 170 180
pF1KE0 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIAAPKVKNQLKETTEAACRYGA
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS47 LWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGA
80 90 100 110 120 130
190 200 210 220
pF1KE0 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FGLPITVAHVDGQTHMLFGSDRMELLAHLLGEKWMGPIPPAVNARL
140 150 160 170 180
226 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:19:47 2016 done: Fri Nov 4 00:19:47 2016
Total Scan time: 2.230 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]