FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0144, 167 aa
  1>>>pF1KE0144 167 - 167 aa - 167 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0059+/-0.000653; mu= 13.7107+/- 0.039
 mean_var=56.7962+/-11.500, 0's: 0 Z-trim(109.9): 13  B-trim: 377 in 1/51
 Lambda= 0.170182
 statistics sampled from 11189 (11199) to 11189 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.344), width:  16
 Scan time:  1.700

The best scores are:                                      opt bits E(32554)
CCDS44966.1 ISCU gene_id:23479|Hs108|chr12         ( 167) 1059 267.5 2.7e-72
CCDS76597.1 ISCU gene_id:23479|Hs108|chr12         ( 154)  887 225.2 1.3e-59
CCDS73518.1 ISCU gene_id:23479|Hs108|chr12         ( 156)  887 225.2 1.3e-59
CCDS9118.1 ISCU gene_id:23479|Hs108|chr12          ( 142)  840 213.7 3.6e-56


>>CCDS44966.1 ISCU gene_id:23479|Hs108|chr12              (167 aa)
 initn: 1059 init1: 1059 opt: 1059  Z-score: 1411.3  bits: 267.5 E(32554): 2.7e-72
Smith-Waterman score: 1059; 98.8% identity (99.4% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KE0 MAAAGAGRLRRVASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG
       :::::: ::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MAAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI
               70        80        90       100       110       120

              130       140       150       160       
pF1KE0 KNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
              130       140       150       160       

>>CCDS76597.1 ISCU gene_id:23479|Hs108|chr12              (154 aa)
 initn: 887 init1: 887 opt: 887  Z-score: 1183.6  bits: 225.2 E(32554): 1.3e-59
Smith-Waterman score: 887; 98.6% identity (99.3% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KE0 MAAAGAGRLRRVASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG
       :::::: ::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MAAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI
               70        80        90       100       110       120

              130       140       150       160       
pF1KE0 KNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
       :::::::::::::::::::                            
CCDS76 KNTDIAKELCLPPVKLHCSKSVLFPAEEKTQLSP             
              130       140       150                 

>>CCDS73518.1 ISCU gene_id:23479|Hs108|chr12              (156 aa)
 initn: 887 init1: 887 opt: 887  Z-score: 1183.6  bits: 225.2 E(32554): 1.3e-59
Smith-Waterman score: 887; 98.6% identity (99.3% similar) in 139 aa overlap (1-139:1-139)

               10        20        30        40        50        60
pF1KE0 MAAAGAGRLRRVASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG
       :::::: ::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAAGAFRLRRAASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TGLVGAPACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTI
               70        80        90       100       110       120

              130       140       150       160       
pF1KE0 KNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
       :::::::::::::::::::                            
CCDS73 KNTDIAKELCLPPVKLHCSRKEGMRNISLNASMEVY           
              130       140       150                 

>>CCDS9118.1 ISCU gene_id:23479|Hs108|chr12               (142 aa)
 initn: 840 init1: 840 opt: 840  Z-score: 1121.8  bits: 213.7 E(32554): 3.6e-56
Smith-Waterman score: 840; 99.2% identity (100.0% similar) in 130 aa overlap (38-167:13-142)

        10        20        30        40        50        60       
pF1KE0 RLRRVASALLLRSPRLPARELSAPARLYHKKVVDHYENPRNVGSLDKTSKNVGTGLVGAP
                                     .:::::::::::::::::::::::::::::
CCDS91                   MVLIDMSVDLSTQVVDHYENPRNVGSLDKTSKNVGTGLVGAP
                                 10        20        30        40  

        70        80        90       100       110       120       
pF1KE0 ACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ACGDVMKLQIQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAK
             50        60        70        80        90       100  

       130       140       150       160       
pF1KE0 ELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
       ::::::::::::::::::::::::::::::::::::::::
CCDS91 ELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEAEKK
            110       120       130       140  




167 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:28:19 2016 done: Fri Nov  4 00:28:20 2016
 Total Scan time:  1.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]