FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0138, 270 aa
  1>>>pF1KE0138 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3509+/-0.000726; mu= 11.1840+/- 0.044
 mean_var=110.4059+/-21.853, 0's: 0 Z-trim(112.8): 14  B-trim: 0 in 0/52
 Lambda= 0.122061
 statistics sampled from 13524 (13533) to 13524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.416), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS7093.1 CCDC3 gene_id:83643|Hs108|chr10         ( 270) 1844 334.7   4e-92
CCDS60484.1 CCDC3 gene_id:83643|Hs108|chr10        ( 145)  963 179.4 1.3e-45


>>CCDS7093.1 CCDC3 gene_id:83643|Hs108|chr10              (270 aa)
 initn: 1844 init1: 1844 opt: 1844  Z-score: 1767.3  bits: 334.7 E(32554): 4e-92
Smith-Waterman score: 1844; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE0 MLRQLLLAALCLAGPPAPARACQLPSEWRPLSEGCRAELAETIVYARVLALHPEAPGLYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MLRQLLLAALCLAGPPAPARACQLPSEWRPLSEGCRAELAETIVYARVLALHPEAPGLYN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 HLPWQYHAGQGGLFYSAEVEMLCDQAWGSMLEVPAGSRLNLTGLGYFSCHSHTVVQDYSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 HLPWQYHAGQGGLFYSAEVEMLCDQAWGSMLEVPAGSRLNLTGLGYFSCHSHTVVQDYSY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FFFLRMDENYNLLPHGVNFQDAIFPDTQENRRMFSSLFQFSNCSQGQQLATFSSDWEIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 FFFLRMDENYNLLPHGVNFQDAIFPDTQENRRMFSSLFQFSNCSQGQQLATFSSDWEIQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DSRLMCSSVQKALFEEEDHVKKLQQKVATLEKRNRQLRERVKKVKRSLRQARKKGRHLEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DSRLMCSSVQKALFEEEDHVKKLQQKVATLEKRNRQLRERVKKVKRSLRQARKKGRHLEL
              190       200       210       220       230       240

              250       260       270
pF1KE0 ANQKLSEKLAAGALPHINARGPVRPPYLRG
       ::::::::::::::::::::::::::::::
CCDS70 ANQKLSEKLAAGALPHINARGPVRPPYLRG
              250       260       270

>>CCDS60484.1 CCDC3 gene_id:83643|Hs108|chr10             (145 aa)
 initn: 963 init1: 963 opt: 963  Z-score: 932.6  bits: 179.4 E(32554): 1.3e-45
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 145 aa overlap (126-270:1-145)

         100       110       120       130       140       150     
pF1KE0 GSRLNLTGLGYFSCHSHTVVQDYSYFFFLRMDENYNLLPHGVNFQDAIFPDTQENRRMFS
                                     ::::::::::::::::::::::::::::::
CCDS60                               MDENYNLLPHGVNFQDAIFPDTQENRRMFS
                                             10        20        30

         160       170       180       190       200       210     
pF1KE0 SLFQFSNCSQGQQLATFSSDWEIQEDSRLMCSSVQKALFEEEDHVKKLQQKVATLEKRNR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 SLFQFSNCSQGQQLATFSSDWEIQEDSRLMCSSVQKALFEEEDHVKKLQQKVATLEKRNR
               40        50        60        70        80        90

         220       230       240       250       260       270
pF1KE0 QLRERVKKVKRSLRQARKKGRHLELANQKLSEKLAAGALPHINARGPVRPPYLRG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QLRERVKKVKRSLRQARKKGRHLELANQKLSEKLAAGALPHINARGPVRPPYLRG
              100       110       120       130       140     




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 00:57:50 2016 done: Fri Nov  4 00:57:50 2016
 Total Scan time:  2.680 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]