FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0134, 214 aa
  1>>>pF1KE0134 214 - 214 aa - 214 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3422+/-0.000786; mu= 13.1855+/- 0.047
 mean_var=61.5109+/-12.666, 0's: 0 Z-trim(107.2): 6  B-trim: 0 in 0/49
 Lambda= 0.163530
 statistics sampled from 9410 (9414) to 9410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.289), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS14746.1 RPL10 gene_id:6134|Hs108|chrX          ( 214) 1494 360.7 3.9e-100
CCDS32071.1 RPL10L gene_id:140801|Hs108|chr14      ( 214) 1438 347.5 3.7e-96
CCDS76059.1 RPL10 gene_id:6134|Hs108|chrX          ( 178) 1037 252.9 9.5e-68


>>CCDS14746.1 RPL10 gene_id:6134|Hs108|chrX               (214 aa)
 initn: 1494 init1: 1494 opt: 1494  Z-score: 1911.2  bits: 360.7 E(32554): 3.9e-100
Smith-Waterman score: 1494; 100.0% identity (100.0% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::::::::::::::::::::::::::::::
CCDS14 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
              190       200       210    

>>CCDS32071.1 RPL10L gene_id:140801|Hs108|chr14           (214 aa)
 initn: 1438 init1: 1438 opt: 1438  Z-score: 1839.8  bits: 347.5 E(32554): 3.7e-96
Smith-Waterman score: 1438; 95.8% identity (99.1% similar) in 214 aa overlap (1-214:1-214)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS32 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
       :::::::::::::::::::::.::::.:::::::::::::::::::::::::::::::::
CCDS32 SSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS32 KPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
              130       140       150       160       170       180

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::.: ::::::::::.::.:::::::.:::
CCDS32 FEDMVAKKCLIPDGCGVKYVPSHGPLDKWRVLHS
              190       200       210    

>>CCDS76059.1 RPL10 gene_id:6134|Hs108|chrX               (178 aa)
 initn: 1239 init1: 1037 opt: 1037  Z-score: 1329.8  bits: 252.9 E(32554): 9.5e-68
Smith-Waterman score: 1171; 83.2% identity (83.2% similar) in 214 aa overlap (1-214:1-178)

               10        20        30        40        50        60
pF1KE0 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQL
       :::::::::::::::::::::::::::                                 
CCDS76 MGRRPARCYRYCKNKPYPKSRFCRGVP---------------------------------
               10        20                                        

               70        80        90       100       110       120
pF1KE0 SSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ---ALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
           30        40        50        60        70        80    

              130       140       150       160       170       180
pF1KE0 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADE
           90       100       110       120       130       140    

              190       200       210    
pF1KE0 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
       ::::::::::::::::::::::::::::::::::
CCDS76 FEDMVAEKRLIPDGCGVKYIPSRGPLDKWRALHS
          150       160       170        




214 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:12:42 2016 done: Fri Nov  4 01:12:42 2016
 Total Scan time:  1.810 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]