Result of FASTA (ccds) for
pF1KE0127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0127, 376 aa
1>>>pF1KE0127 376 - 376 aa - 376 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8355+/-0.000905; mu= 13.1463+/- 0.054
mean_var=59.5731+/-11.628, 0's: 0 Z-trim(104.7): 10 B-trim: 8 in 1/49
Lambda= 0.166169
statistics sampled from 8047 (8051) to 8047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.247), width: 16
Scan time: 2.670
The best scores are: opt bits E(32554)
CCDS55547.1 TMLHE gene_id:55217|Hs108|chrX ( 376) 2607 633.5 9.2e-182
CCDS14768.1 TMLHE gene_id:55217|Hs108|chrX ( 421) 2315 563.5 1.2e-160
CCDS7862.1 BBOX1 gene_id:8424|Hs108|chr11 ( 387) 431 111.8 1e-24
>>CCDS55547.1 TMLHE gene_id:55217|Hs108|chrX (376 aa)
initn: 2607 init1: 2607 opt: 2607 Z-score: 3376.7 bits: 633.5 E(32554): 9.2e-182
Smith-Waterman score: 2607; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
310 320 330 340 350 360
370
pF1KE0 RHFVSGTSIEHRGSLI
::::::::::::::::
CCDS55 RHFVSGTSIEHRGSLI
370
>>CCDS14768.1 TMLHE gene_id:55217|Hs108|chrX (421 aa)
initn: 2311 init1: 2311 opt: 2315 Z-score: 2997.5 bits: 563.5 E(32554): 1.2e-160
Smith-Waterman score: 2315; 93.9% identity (95.8% similar) in 359 aa overlap (1-359:1-354)
10 20 30 40 50 60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
:::::::::::::::::::::::::::::::: :. .: ... :. .: :
CCDS14 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRY-----NNYDRAVINTVPYDVVHRWYTA
310 320 330 340 350
370
pF1KE0 RHFVSGTSIEHRGSLI
CCDS14 HRTLTIELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTAR
360 370 380 390 400 410
>>CCDS7862.1 BBOX1 gene_id:8424|Hs108|chr11 (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 557.2 bits: 111.8 E(32554): 1e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
CCDS78 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
CCDS78 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
CCDS78 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
CCDS78 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
CCDS78 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
376 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:53:19 2016 done: Fri Nov 4 01:53:20 2016
Total Scan time: 2.670 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]