FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0122, 265 aa
  1>>>pF1KE0122 265 - 265 aa - 265 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6650+/-0.000319; mu= 13.3430+/- 0.020
 mean_var=71.2604+/-14.394, 0's: 0 Z-trim(116.8): 6  B-trim: 191 in 1/51
 Lambda= 0.151932
 statistics sampled from 28263 (28268) to 28263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.331), width:  16
 Scan time:  7.480

The best scores are:                                      opt bits E(85289)
NP_057119 (OMIM: 612898,616276) ubiquinone biosynt ( 265) 1771 396.9  2e-110
NP_001292871 (OMIM: 612898,616276) ubiquinone bios ( 100)  455 108.2   6e-24
XP_016870281 (OMIM: 612898,616276) PREDICTED: ubiq ( 100)  450 107.1 1.3e-23
XP_016870282 (OMIM: 612898,616276) PREDICTED: ubiq ( 100)  450 107.1 1.3e-23


>>NP_057119 (OMIM: 612898,616276) ubiquinone biosynthesi  (265 aa)
 initn: 1771 init1: 1771 opt: 1771  Z-score: 2103.3  bits: 396.9 E(85289): 2e-110
Smith-Waterman score: 1771; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)

               10        20        30        40        50        60
pF1KE0 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 GSLGREYLRFLDVNRVSPDTRAPTRFVDDEELAYVIQRYREVHDMLHTLLGMPTNILGEI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VVKWFEAVQTGLPMCILGAFFGPIRLGAQSLQVLVSELIPWAVQNGRRAPCVLNLYYERR
              190       200       210       220       230       240

              250       260     
pF1KE0 WEQSLRALREELGITAPPMHVQGLA
       :::::::::::::::::::::::::
NP_057 WEQSLRALREELGITAPPMHVQGLA
              250       260     

>>NP_001292871 (OMIM: 612898,616276) ubiquinone biosynth  (100 aa)
 initn: 455 init1: 455 opt: 455  Z-score: 550.9  bits: 108.2 E(85289): 6e-24
Smith-Waterman score: 455; 97.1% identity (97.1% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE0 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
       :::::::  :                                                  
NP_001 LYNPYRHGSVPGFRHPPSTWASSRACRKAPSVASISVSWM                    
               70        80        90       100                    

>>XP_016870281 (OMIM: 612898,616276) PREDICTED: ubiquino  (100 aa)
 initn: 450 init1: 450 opt: 450  Z-score: 545.0  bits: 107.1 E(85289): 1.3e-23
Smith-Waterman score: 450; 95.7% identity (97.1% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE0 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_016 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKGLLAAGSAAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
       :::::::  :                                                  
XP_016 LYNPYRHGSVPGFRHPPSTWASSRACRKAPSVASISVSWM                    
               70        80        90       100                    

>>XP_016870282 (OMIM: 612898,616276) PREDICTED: ubiquino  (100 aa)
 initn: 450 init1: 450 opt: 450  Z-score: 545.0  bits: 107.1 E(85289): 1.3e-23
Smith-Waterman score: 450; 95.7% identity (97.1% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE0 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKALLAAGSAAMA
       :::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_016 MATLLRPVLRRLCGLPGLQRPAAEMPLRARSDGAGPLYSHHLPTSPLQKGLLAAGSAAMA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LYNPYRHDMVAVLGETTGHRTLKVLRDQMRRDPEGAQILQERPRISTSTLDLGKLQSLPE
       :::::::  :                                                  
XP_016 LYNPYRHGSVPGFRHPPSTWASSRACRKAPSVASISVSWM                    
               70        80        90       100                    




265 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:07:49 2016 done: Fri Nov  4 02:07:50 2016
 Total Scan time:  7.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]