FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0121, 127 aa
  1>>>pF1KE0121 127 - 127 aa - 127 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.4943+/-0.000333; mu= 14.6792+/- 0.020
 mean_var=55.5367+/-11.424, 0's: 0 Z-trim(114.7): 6  B-trim: 0 in 0/54
 Lambda= 0.172101
 statistics sampled from 24663 (24667) to 24663 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.289), width:  16
 Scan time:  4.640

The best scores are:                                      opt bits E(85289)
XP_006711329 (OMIM: 614737) PREDICTED: mitochondri ( 127)  860 221.1 3.9e-58
NP_056230 (OMIM: 614737) mitochondrial pyruvate ca ( 127)  860 221.1 3.9e-58
NP_001137146 (OMIM: 614737) mitochondrial pyruvate ( 127)  860 221.1 3.9e-58
NP_057182 (OMIM: 614738,614741) mitochondrial pyru ( 109)  146 43.7   8e-05


>>XP_006711329 (OMIM: 614737) PREDICTED: mitochondrial p  (127 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1164.8  bits: 221.1 E(85289): 3.9e-58
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KE0 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
               70        80        90       100       110       120

              
pF1KE0 LKAKAHK
       :::::::
XP_006 LKAKAHK
              

>>NP_056230 (OMIM: 614737) mitochondrial pyruvate carrie  (127 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1164.8  bits: 221.1 E(85289): 3.9e-58
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KE0 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
               70        80        90       100       110       120

              
pF1KE0 LKAKAHK
       :::::::
NP_056 LKAKAHK
              

>>NP_001137146 (OMIM: 614737) mitochondrial pyruvate car  (127 aa)
 initn: 860 init1: 860 opt: 860  Z-score: 1164.8  bits: 221.1 E(85289): 3.9e-58
Smith-Waterman score: 860; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KE0 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAAGARGLRATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARPAEKLSTAQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQE
               70        80        90       100       110       120

              
pF1KE0 LKAKAHK
       :::::::
NP_001 LKAKAHK
              

>>NP_057182 (OMIM: 614738,614741) mitochondrial pyruvate  (109 aa)
 initn: 144 init1: 144 opt: 146  Z-score: 207.6  bits: 43.7 E(85289): 8e-05
Smith-Waterman score: 146; 27.9% identity (59.3% similar) in 86 aa overlap (40-125:24-109)

      10        20        30        40        50        60         
pF1KE0 RATYHRLLDKVELMLPEKLRPLYNHPAGPRTVFFWAPIMKWGLVCAGLADMARPAEKLST
                                     .. ::.:. .:::  :.. :: .  : .: 
NP_057        MAGALVRKAADYVRSKDFRDYLMSTHFWGPVANWGLPIAAINDMKKSPEIISG
                      10        20        30        40        50   

      70        80        90       100       110       120       
pF1KE0 AQSAVLMATGFIWSRYSLVIIPKNWSLFAVNFFVGAAGASQLFRIWRYNQELKAKAHK
        .. .:   .. . :..  . :.:: ::: .    .:   :  :. ....   :.:  
NP_057 RMTFALCCYSLTFMRFAYKVQPRNWLLFACHATNEVAQLIQGGRLIKHEMTKTASA  
            60        70        80        90       100           




127 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:09:00 2016 done: Fri Nov  4 02:09:00 2016
 Total Scan time:  4.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]