FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0119, 341 aa
  1>>>pF1KE0119 341 - 341 aa - 341 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7267+/-0.000426; mu= 19.1316+/- 0.027
 mean_var=60.9669+/-12.431, 0's: 0 Z-trim(110.1): 25  B-trim: 190 in 2/49
 Lambda= 0.164258
 statistics sampled from 18372 (18376) to 18372 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.215), width:  16
 Scan time:  7.550

The best scores are:                                      opt bits E(85289)
NP_689597 (OMIM: 603650,615983) Bardet-Biedl syndr ( 341) 2230 537.3 1.8e-152


>>NP_689597 (OMIM: 603650,615983) Bardet-Biedl syndrome   (341 aa)
 initn: 2230 init1: 2230 opt: 2230  Z-score: 2858.2  bits: 537.3 E(85289): 1.8e-152
Smith-Waterman score: 2230; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KE0 MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV
              250       260       270       280       290       300

              310       320       330       340 
pF1KE0 AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS
       :::::::::::::::::::::::::::::::::::::::::
NP_689 AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS
              310       320       330       340 




341 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:14:10 2016 done: Fri Nov  4 02:14:11 2016
 Total Scan time:  7.550 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]