FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0119, 341 aa
  1>>>pF1KE0119 341 - 341 aa - 341 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5264+/-0.00101; mu= 14.2387+/- 0.061
 mean_var=59.9973+/-12.022, 0's: 0 Z-trim(102.8): 23  B-trim: 0 in 0/51
 Lambda= 0.165580
 statistics sampled from 7097 (7102) to 7097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.218), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS2233.1 BBS5 gene_id:129880|Hs108|chr2          ( 341) 2230 541.5 3.8e-154


>>CCDS2233.1 BBS5 gene_id:129880|Hs108|chr2               (341 aa)
 initn: 2230 init1: 2230 opt: 2230  Z-score: 2880.9  bits: 541.5 E(32554): 3.8e-154
Smith-Waterman score: 2230; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KE0 MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MSVLDALWEDRDVRFDLSAQQMKTRPGEVLIDCLDSIEDTKGNNGDRGRLLVTNLRILWH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SLALSRVNVSVGYNCILNITTRTANSKLRGQTEALYILTKCNSTRFEFIFTNLVPGSPRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FTSVMAVHRAYETSKMYRDFKLRSALIQNKQLRLLPQEHVYDKINGVWNLSSDQGNLGTF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FITNVRIVWHANMNDSFNVSIPYLQIRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 EKLQESVKEINSLHKVYSASPIFGVDYEMEEKPQPLEALTVEQIQDDVEIDSDGHTDAFV
              250       260       270       280       290       300

              310       320       330       340 
pF1KE0 AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS
       :::::::::::::::::::::::::::::::::::::::::
CCDS22 AYFADGNKQQDREPVFSEELGLAIEKLKDGFTLQGLWEVMS
              310       320       330       340 




341 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:14:09 2016 done: Fri Nov  4 02:14:10 2016
 Total Scan time:  2.500 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]