FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0118, 195 aa
  1>>>pF1KE0118 195 - 195 aa - 195 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1686+/-0.000822; mu= 13.2758+/- 0.049
 mean_var=53.1058+/-10.840, 0's: 0 Z-trim(105.1): 12  B-trim: 0 in 0/47
 Lambda= 0.175996
 statistics sampled from 8222 (8228) to 8222 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.253), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS8268.1 TMEM126A gene_id:84233|Hs108|chr11      ( 195) 1267 329.4 8.3e-91
CCDS58165.1 TMEM126A gene_id:84233|Hs108|chr11     ( 125)  830 218.4 1.4e-57
CCDS53686.1 TMEM126B gene_id:55863|Hs108|chr11     ( 200)  287 80.6 6.9e-16
CCDS8267.2 TMEM126B gene_id:55863|Hs108|chr11      ( 230)  287 80.6 7.8e-16


>>CCDS8268.1 TMEM126A gene_id:84233|Hs108|chr11           (195 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1743.7  bits: 329.4 E(32554): 8.3e-91
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KE0 MENHKSNNKENITIVDISRKINQLPEAERNLLENGSVYVGLNAALCGLIANSLFRRILNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MENHKSNNKENITIVDISRKINQLPEAERNLLENGSVYVGLNAALCGLIANSLFRRILNV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 TKARIAAGLPMAGIPFLTTDLTYRCFVSFPLNTGDLDCETCTITRSGLTGLVIGGLYPVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TKARIAAGLPMAGIPFLTTDLTYRCFVSFPLNTGDLDCETCTITRSGLTGLVIGGLYPVF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFRKMLFPILLQTMFSAYLGSEQYKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFRKMLFPILLQTMFSAYLGSEQYKL
              130       140       150       160       170       180

              190     
pF1KE0 LIKALQLSEPGKEIH
       :::::::::::::::
CCDS82 LIKALQLSEPGKEIH
              190     

>>CCDS58165.1 TMEM126A gene_id:84233|Hs108|chr11          (125 aa)
 initn: 830 init1: 830 opt: 830  Z-score: 1147.2  bits: 218.4 E(32554): 1.4e-57
Smith-Waterman score: 830; 100.0% identity (100.0% similar) in 125 aa overlap (71-195:1-125)

               50        60        70        80        90       100
pF1KE0 LNAALCGLIANSLFRRILNVTKARIAAGLPMAGIPFLTTDLTYRCFVSFPLNTGDLDCET
                                     ::::::::::::::::::::::::::::::
CCDS58                               MAGIPFLTTDLTYRCFVSFPLNTGDLDCET
                                             10        20        30

              110       120       130       140       150       160
pF1KE0 CTITRSGLTGLVIGGLYPVFLAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFRKML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 CTITRSGLTGLVIGGLYPVFLAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFRKML
               40        50        60        70        80        90

              170       180       190     
pF1KE0 FPILLQTMFSAYLGSEQYKLLIKALQLSEPGKEIH
       :::::::::::::::::::::::::::::::::::
CCDS58 FPILLQTMFSAYLGSEQYKLLIKALQLSEPGKEIH
              100       110       120     

>>CCDS53686.1 TMEM126B gene_id:55863|Hs108|chr11          (200 aa)
 initn: 258 init1: 173 opt: 287  Z-score: 398.8  bits: 80.6 E(32554): 6.9e-16
Smith-Waterman score: 287; 30.2% identity (64.2% similar) in 179 aa overlap (9-186:19-194)

                         10        20         30        40         
pF1KE0           MENHKSNNKENITIVDISRKINQL-PEAERNLLENGSVYVGLNAALCGLI
                         .. ..:  : .... :  :  .:. . ..   : .:.. :..
CCDS53 MAASMHGQPSPSLEDAKLRRPMVIEIIEKNFDYLRKEMTQNIYQMAT--FGTTAGFSGIF
               10        20        30        40          50        

      50        60        70        80        90       100         
pF1KE0 ANSLFRRILNVTKARIAAGLPMAGIPFLTTDLTYRCFVSFPLNTGDLDCETCTITRSGLT
       .: :::: ..: .  . .   .: .:::.: .: . ::   : . ... :.: . ::.: 
CCDS53 SNFLFRRCFKVKHDALKTYASLATLPFLSTVVTDKLFVIDALYSDNISKENC-VFRSSLI
       60        70        80        90       100       110        

     110       120       130       140       150       160         
pF1KE0 GLVIGGLYPVFLAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFRKMLFPILLQTMF
       :.: : .::  ::.  :: ::..:... :: :: .: .:.   .  .. : .:...: ::
CCDS53 GIVCGVFYPSSLAFTKNGRLATKYHTVPLPPKGRVLIHWMTLCQTQMKLMAIPLVFQIMF
       120       130       140       150       160       170       

     170       180       190     
pF1KE0 SAYLGSEQYKLLIKALQLSEPGKEIH
       .   :  .: .. ..:.         
CCDS53 GILNGLYHYAVFEETLEKTIHEE   
       180       190       200   

>>CCDS8267.2 TMEM126B gene_id:55863|Hs108|chr11           (230 aa)
 initn: 258 init1: 173 opt: 287  Z-score: 397.8  bits: 80.6 E(32554): 7.8e-16
Smith-Waterman score: 287; 30.2% identity (64.2% similar) in 179 aa overlap (9-186:49-224)

                                     10        20         30       
pF1KE0                       MENHKSNNKENITIVDISRKINQL-PEAERNLLENGSV
                                     .. ..:  : .... :  :  .:. . .. 
CCDS82 PVGTEEAPKVFKMAASMHGQPSPSLEDAKLRRPMVIEIIEKNFDYLRKEMTQNIYQMAT-
       20        30        40        50        60        70        

        40        50        60        70        80        90       
pF1KE0 YVGLNAALCGLIANSLFRRILNVTKARIAAGLPMAGIPFLTTDLTYRCFVSFPLNTGDLD
         : .:.. :...: :::: ..: .  . .   .: .:::.: .: . ::   : . ...
CCDS82 -FGTTAGFSGIFSNFLFRRCFKVKHDALKTYASLATLPFLSTVVTDKLFVIDALYSDNIS
         80        90       100       110       120       130      

       100       110       120       130       140       150       
pF1KE0 CETCTITRSGLTGLVIGGLYPVFLAIPVNGGLAARYQSALLPHKGNILSYWIRTSKPVFR
        :.: . ::.: :.: : .::  ::.  :: ::..:... :: :: .: .:.   .  ..
CCDS82 KENC-VFRSSLIGIVCGVFYPSSLAFTKNGRLATKYHTVPLPPKGRVLIHWMTLCQTQMK
        140        150       160       170       180       190     

       160       170       180       190     
pF1KE0 KMLFPILLQTMFSAYLGSEQYKLLIKALQLSEPGKEIH
        : .:...: ::.   :  .: .. ..:.         
CCDS82 LMAIPLVFQIMFGILNGLYHYAVFEETLEKTIHEE   
         200       210       220       230   




195 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:17:51 2016 done: Fri Nov  4 02:17:51 2016
 Total Scan time:  1.520 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]