Result of FASTA (omim) for
pF1KE0109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0109, 136 aa
1>>>pF1KE0109 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1991+/-0.000314; mu= 11.8023+/- 0.019
mean_var=59.4939+/-12.169, 0's: 0 Z-trim(115.8): 27 B-trim: 45 in 1/51
Lambda= 0.166279
statistics sampled from 26468 (26495) to 26468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.311), width: 16
Scan time: 5.070
The best scores are: opt bits E(85289)
NP_001002027 (OMIM: 603192) ATP synthase F(0) comp ( 136) 868 216.0 1.5e-56
NP_005166 (OMIM: 603192) ATP synthase F(0) complex ( 136) 868 216.0 1.5e-56
NP_001002258 (OMIM: 602736) ATP synthase F(0) comp ( 142) 586 148.3 3.7e-36
NP_001680 (OMIM: 602736) ATP synthase F(0) complex ( 142) 586 148.3 3.7e-36
NP_001317198 (OMIM: 603193) ATP synthase F(0) comp ( 141) 567 143.8 8.7e-35
NP_001002031 (OMIM: 603193) ATP synthase F(0) comp ( 157) 567 143.8 9.5e-35
XP_016874950 (OMIM: 603193) PREDICTED: ATP synthas ( 157) 567 143.8 9.5e-35
NP_005167 (OMIM: 603193) ATP synthase F(0) complex ( 198) 567 143.8 1.2e-34
XP_016874949 (OMIM: 603193) PREDICTED: ATP synthas ( 198) 567 143.8 1.2e-34
NP_001177258 (OMIM: 602736) ATP synthase F(0) comp ( 105) 350 91.6 3.1e-19
>>NP_001002027 (OMIM: 603192) ATP synthase F(0) complex (136 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1136.0 bits: 216.0 E(85289): 1.5e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
70 80 90 100 110 120
130
pF1KE0 MGLFCLMVAFLILFAM
::::::::::::::::
NP_001 MGLFCLMVAFLILFAM
130
>>NP_005166 (OMIM: 603192) ATP synthase F(0) complex sub (136 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1136.0 bits: 216.0 E(85289): 1.5e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
70 80 90 100 110 120
130
pF1KE0 MGLFCLMVAFLILFAM
::::::::::::::::
NP_005 MGLFCLMVAFLILFAM
130
>>NP_001002258 (OMIM: 602736) ATP synthase F(0) complex (142 aa)
initn: 603 init1: 533 opt: 586 Z-score: 770.1 bits: 148.3 E(85289): 3.7e-36
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-136:1-142)
10 20 30 40 50
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
120 130
pF1KE0 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
130 140
>>NP_001680 (OMIM: 602736) ATP synthase F(0) complex sub (142 aa)
initn: 603 init1: 533 opt: 586 Z-score: 770.1 bits: 148.3 E(85289): 3.7e-36
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-136:1-142)
10 20 30 40 50
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
120 130
pF1KE0 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
130 140
>>NP_001317198 (OMIM: 603193) ATP synthase F(0) complex (141 aa)
initn: 548 init1: 523 opt: 567 Z-score: 745.6 bits: 143.8 E(85289): 8.7e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:7-141)
10 20 30 40 50
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
:.: :.:.. .. : ::.:: :. : .. : . . :: :. : :
NP_001 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
120 130
pF1KE0 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
NP_001 FALSEAMGLFCLMVAFLILFAM
120 130 140
>>NP_001002031 (OMIM: 603193) ATP synthase F(0) complex (157 aa)
initn: 561 init1: 523 opt: 567 Z-score: 744.8 bits: 143.8 E(85289): 9.5e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:23-157)
10 20 30 40
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPS
:.: :.:.. .. : ::.:: :. : .. : .
NP_001 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
10 20 30 40 50 60
50 60 70 80 90
pF1KE0 YSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
. :: :. : ::::..::::::::::::::::::::::::::::::::::::::::
NP_001 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100 110 120
100 110 120 130
pF1KE0 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::
NP_001 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
130 140 150
>>XP_016874950 (OMIM: 603193) PREDICTED: ATP synthase F( (157 aa)
initn: 561 init1: 523 opt: 567 Z-score: 744.8 bits: 143.8 E(85289): 9.5e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:23-157)
10 20 30 40
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPS
:.: :.:.. .. : ::.:: :. : .. : .
XP_016 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
10 20 30 40 50 60
50 60 70 80 90
pF1KE0 YSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
. :: :. : ::::..::::::::::::::::::::::::::::::::::::::::
XP_016 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100 110 120
100 110 120 130
pF1KE0 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::
XP_016 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
130 140 150
>>NP_005167 (OMIM: 603193) ATP synthase F(0) complex sub (198 aa)
initn: 548 init1: 523 opt: 567 Z-score: 743.3 bits: 143.8 E(85289): 1.2e-34
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:64-198)
10 20 30
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---
:.: :.:.. .. : ::.:: :. :
NP_005 RCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 VNSSKQPSYSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
.. : . . :: :. : ::::..::::::::::::::::::::::::::::::::
NP_005 TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
100 110 120 130 140 150
100 110 120 130
pF1KE0 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
160 170 180 190
>>XP_016874949 (OMIM: 603193) PREDICTED: ATP synthase F( (198 aa)
initn: 548 init1: 523 opt: 567 Z-score: 743.3 bits: 143.8 E(85289): 1.2e-34
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:64-198)
10 20 30
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---
:.: :.:.. .. : ::.:: :. :
XP_016 RCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 VNSSKQPSYSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
.. : . . :: :. : ::::..::::::::::::::::::::::::::::::::
XP_016 TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
100 110 120 130 140 150
100 110 120 130
pF1KE0 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
160 170 180 190
>>NP_001177258 (OMIM: 602736) ATP synthase F(0) complex (105 aa)
initn: 367 init1: 297 opt: 350 Z-score: 466.2 bits: 91.6 E(85289): 3.1e-19
Smith-Waterman score: 350; 60.0% identity (72.4% similar) in 105 aa overlap (1-99:1-105)
10 20 30 40 50
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
NP_001 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..::::::::::::::::::::::::::::::::::::::::
NP_001 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100
120 130
pF1KE0 FALSEAMGLFCLMVAFLILFAM
136 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:52:35 2016 done: Fri Nov 4 02:52:36 2016
Total Scan time: 5.070 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]