Result of FASTA (ccds) for
pF1KE0109
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0109, 136 aa
1>>>pF1KE0109 136 - 136 aa - 136 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3138+/-0.000687; mu= 11.4963+/- 0.041
mean_var=60.7210+/-12.325, 0's: 0 Z-trim(109.3): 12 B-trim: 0 in 0/50
Lambda= 0.164590
statistics sampled from 10761 (10771) to 10761 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.331), width: 16
Scan time: 1.240
The best scores are: opt bits E(32554)
CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17 ( 136) 868 213.8 2.7e-56
CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2 ( 142) 586 146.8 4e-36
CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12 ( 141) 567 142.3 9e-35
CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12 ( 157) 567 142.3 9.9e-35
CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12 ( 198) 567 142.4 1.2e-34
>>CCDS11539.1 ATP5G1 gene_id:516|Hs108|chr17 (136 aa)
initn: 868 init1: 868 opt: 868 Z-score: 1124.3 bits: 213.8 E(32554): 2.7e-56
Smith-Waterman score: 868; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFPLQVARREFQTSVVS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEA
70 80 90 100 110 120
130
pF1KE0 MGLFCLMVAFLILFAM
::::::::::::::::
CCDS11 MGLFCLMVAFLILFAM
130
>>CCDS2263.1 ATP5G3 gene_id:518|Hs108|chr2 (142 aa)
initn: 603 init1: 533 opt: 586 Z-score: 762.1 bits: 146.8 E(32554): 4e-36
Smith-Waterman score: 586; 70.4% identity (79.6% similar) in 142 aa overlap (1-136:1-142)
10 20 30 40 50
pF1KE0 MQTAGALFISPALIRCCTRGLIRPVSASFLNSPVNSSKQPSYSNFP------LQVARREF
: . . : .:.::: .: ::.::: :. : : . . : :. .:::
CCDS22 MFACAKLACTPSLIRAGSRVAYRPISASVLSRPEASRTGEGSTVFNGAQNGVSQLIQREF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
70 80 90 100 110 120
120 130
pF1KE0 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
CCDS22 FALSEAMGLFCLMVAFLILFAM
130 140
>>CCDS81694.1 ATP5G2 gene_id:517|Hs108|chr12 (141 aa)
initn: 548 init1: 523 opt: 567 Z-score: 737.8 bits: 142.3 E(32554): 9e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:7-141)
10 20 30 40 50
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPSYSNFPLQ--VARREF
:.: :.:.. .. : ::.:: :. : .. : . . :: :. : :
CCDS81 MFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSF
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 QTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
:::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILG
60 70 80 90 100 110
120 130
pF1KE0 FALSEAMGLFCLMVAFLILFAM
::::::::::::::::::::::
CCDS81 FALSEAMGLFCLMVAFLILFAM
120 130 140
>>CCDS31812.1 ATP5G2 gene_id:517|Hs108|chr12 (157 aa)
initn: 561 init1: 523 opt: 567 Z-score: 737.0 bits: 142.3 E(32554): 9.9e-35
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:23-157)
10 20 30 40
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---VNSSKQPS
:.: :.:.. .. : ::.:: :. : .. : .
CCDS31 MPELILSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEILTDESLSSL
10 20 30 40 50 60
50 60 70 80 90
pF1KE0 YSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
. :: :. : ::::..::::::::::::::::::::::::::::::::::::::::
CCDS31 AVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYAR
70 80 90 100 110 120
100 110 120 130
pF1KE0 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::
CCDS31 NPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
130 140 150
>>CCDS8863.2 ATP5G2 gene_id:517|Hs108|chr12 (198 aa)
initn: 548 init1: 523 opt: 567 Z-score: 735.4 bits: 142.4 E(32554): 1.2e-34
Smith-Waterman score: 567; 71.9% identity (83.0% similar) in 135 aa overlap (8-136:64-198)
10 20 30
pF1KE0 MQTAGALFIS-PALIRCCTRGLIRPVSASFLNSP---
:.: :.:.. .. : ::.:: :. :
CCDS88 RCSAPLCLLCSGSSSPATAPHPLKMFACSKFVSTPSLVKSTSQLLSRPLSAVVLKRPEIL
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE0 VNSSKQPSYSNFPLQ--VARREFQTSVVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
.. : . . :: :. : ::::..::::::::::::::::::::::::::::::::
CCDS88 TDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFG
100 110 120 130 140 150
100 110 120 130
pF1KE0 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
:::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM
160 170 180 190
136 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:52:35 2016 done: Fri Nov 4 02:52:35 2016
Total Scan time: 1.240 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]