FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0108, 318 aa
  1>>>pF1KE0108 318 - 318 aa - 318 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6949+/-0.000346; mu= 14.2765+/- 0.022
 mean_var=81.2286+/-16.164, 0's: 0 Z-trim(115.9): 10  B-trim: 75 in 2/54
 Lambda= 0.142305
 statistics sampled from 26684 (26690) to 26684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.313), width:  16
 Scan time:  7.330

The best scores are:                                      opt bits E(85289)
NP_115664 (OMIM: 616933) UAP56-interacting factor  ( 318) 2078 436.1 4.6e-122
NP_001011537 (OMIM: 616933) UAP56-interacting fact ( 292) 1853 389.9 3.4e-108


>>NP_115664 (OMIM: 616933) UAP56-interacting factor isof  (318 aa)
 initn: 2078 init1: 2078 opt: 2078  Z-score: 2312.4  bits: 436.1 E(85289): 4.6e-122
Smith-Waterman score: 2078; 99.7% identity (100.0% similar) in 318 aa overlap (1-318:1-318)

               10        20        30        40        50        60
pF1KE0 MNRFGTRLVGATATSSPPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MNRFGTRLVGATATSSPPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLLQQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SGAQQFRMRVRWGIQQNSGFGKTSLNHRGRVMPGKRRPNGVITGLAARKTTGIRKGISPM
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
NP_115 SGAQQFRMRVRWGIQQNSGFGKTSLNRRGRVMPGKRRPNGVITGLAARKTTGIRKGISPM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 NRPPLSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRKNNIPANFTRSGNKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 NRPPLSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRKNNIPANFTRSGNKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 NHQKDTRQATFLFRRGLKVQAQLNTEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 NHQKDTRQATFLFRRGLKVQAQLNTEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QCPVTQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDINSVGKQTGMTLNERFGILKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QCPVTQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDINSVGKQTGMTLNERFGILKE
              250       260       270       280       290       300

              310        
pF1KE0 QRATLTYNKGGSRFVTVG
       ::::::::::::::::::
NP_115 QRATLTYNKGGSRFVTVG
              310        

>>NP_001011537 (OMIM: 616933) UAP56-interacting factor i  (292 aa)
 initn: 1853 init1: 1853 opt: 1853  Z-score: 2063.3  bits: 389.9 E(85289): 3.4e-108
Smith-Waterman score: 1853; 99.3% identity (100.0% similar) in 284 aa overlap (35-318:9-292)

           10        20        30        40        50        60    
pF1KE0 GTRLVGATATSSPPPKARSNENLDKIDMSLDDIIKLNRKEGKKQNFPRLNRRLLQQSGAQ
                                     .:::::::::::::::::::::::::::::
NP_001                       MEPSVIMGNDIIKLNRKEGKKQNFPRLNRRLLQQSGAQ
                                     10        20        30        

           70        80        90       100       110       120    
pF1KE0 QFRMRVRWGIQQNSGFGKTSLNHRGRVMPGKRRPNGVITGLAARKTTGIRKGISPMNRPP
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
NP_001 QFRMRVRWGIQQNSGFGKTSLNRRGRVMPGKRRPNGVITGLAARKTTGIRKGISPMNRPP
       40        50        60        70        80        90        

          130       140       150       160       170       180    
pF1KE0 LSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRKNNIPANFTRSGNKLNHQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSDKNIEQYFPVLKRKANLLRQNEGQRKPVAVLKRPSQLSRKNNIPANFTRSGNKLNHQK
      100       110       120       130       140       150        

          190       200       210       220       230       240    
pF1KE0 DTRQATFLFRRGLKVQAQLNTEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAVQCPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTRQATFLFRRGLKVQAQLNTEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAVQCPV
      160       170       180       190       200       210        

          250       260       270       280       290       300    
pF1KE0 TQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDINSVGKQTGMTLNERFGILKEQRAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TQKPRLTRTAVPSFLTKREQSDVKKVPKGVPLQFDINSVGKQTGMTLNERFGILKEQRAT
      220       230       240       250       260       270        

          310        
pF1KE0 LTYNKGGSRFVTVG
       ::::::::::::::
NP_001 LTYNKGGSRFVTVG
      280       290  




318 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:59:40 2016 done: Sat Nov  5 11:59:41 2016
 Total Scan time:  7.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]