Result of FASTA (omim) for
pF1KE0107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0107, 283 aa
1>>>pF1KE0107 283 - 283 aa - 283 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3398+/-0.000465; mu= 10.5997+/- 0.028
mean_var=147.1811+/-30.318, 0's: 0 Z-trim(113.1): 394 B-trim: 34 in 1/51
Lambda= 0.105718
statistics sampled from 21800 (22290) to 21800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.261), width: 16
Scan time: 6.880
The best scores are: opt bits E(85289)
XP_016877356 (OMIM: 604447) PREDICTED: guanine nuc ( 212) 1278 206.8 2.9e-53
XP_011519465 (OMIM: 604447) PREDICTED: guanine nuc ( 301) 1278 206.9 3.7e-53
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353) 1278 207.0 4.1e-53
XP_011519464 (OMIM: 604447) PREDICTED: guanine nuc ( 353) 1278 207.0 4.1e-53
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395) 1278 207.1 4.4e-53
NP_001269467 (OMIM: 139380,613065,616973) guanine ( 240) 776 130.3 3.6e-30
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340) 776 130.4 4.5e-30
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340) 776 130.4 4.5e-30
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340) 776 130.4 4.5e-30
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340) 776 130.4 4.5e-30
NP_001269468 (OMIM: 139380,613065,616973) guanine ( 340) 776 130.4 4.5e-30
NP_005264 (OMIM: 139390) guanine nucleotide-bindin ( 340) 772 129.8 6.9e-30
XP_005247749 (OMIM: 610863,615185) PREDICTED: guan ( 340) 766 128.9 1.3e-29
NP_067642 (OMIM: 610863,615185) guanine nucleotide ( 340) 766 128.9 1.3e-29
XP_006713784 (OMIM: 610863,615185) PREDICTED: guan ( 340) 766 128.9 1.3e-29
NP_002066 (OMIM: 139130,145500,617024) guanine nuc ( 340) 763 128.4 1.8e-29
NP_001284500 (OMIM: 139130,145500,617024) guanine ( 339) 739 124.8 2.2e-28
XP_011519255 (OMIM: 139130,145500,617024) PREDICTE ( 360) 625 107.4 4e-23
NP_008882 (OMIM: 601787) transcription initiation ( 800) 389 71.8 4.7e-12
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 360 66.9 5e-11
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279) 360 66.9 5e-11
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521) 360 67.2 7.5e-11
NP_004688 (OMIM: 607795,615922) U4/U6 small nuclea ( 522) 360 67.2 7.5e-11
XP_011527969 (OMIM: 601475) PREDICTED: periodic tr ( 734) 323 61.7 4.7e-09
NP_005040 (OMIM: 601475) periodic tryptophan prote ( 919) 323 61.8 5.5e-09
NP_001093207 (OMIM: 616850) WD repeat domain-conta ( 315) 303 58.2 2.2e-08
NP_115708 (OMIM: 616850) WD repeat domain-containi ( 315) 303 58.2 2.2e-08
NP_620640 (OMIM: 601787) transcription initiation ( 745) 307 59.3 2.6e-08
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 301 58.2 3.9e-08
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 301 58.2 4.2e-08
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 301 58.3 4.4e-08
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 301 58.3 4.6e-08
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 301 58.3 4.6e-08
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 301 58.3 4.7e-08
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 301 58.3 4.7e-08
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 301 58.3 4.7e-08
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 301 58.3 4.7e-08
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707) 301 58.3 4.7e-08
XP_011510122 (OMIM: 612173) PREDICTED: sperm-assoc ( 569) 292 56.9 1.1e-07
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285) 286 55.6 1.3e-07
NP_055317 (OMIM: 608330) pre-mRNA-processing facto ( 504) 289 56.3 1.3e-07
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 286 55.7 1.4e-07
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 285 55.6 1.6e-07
NP_056975 (OMIM: 605585) pre-mRNA-processing facto ( 579) 275 54.3 6.5e-07
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 274 54.2 7.8e-07
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 274 54.2 7.8e-07
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 274 54.2 7.8e-07
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 274 54.2 7.8e-07
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 274 54.2 7.9e-07
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 274 54.2 7.9e-07
>>XP_016877356 (OMIM: 604447) PREDICTED: guanine nucleot (212 aa)
initn: 1273 init1: 1273 opt: 1278 Z-score: 1077.2 bits: 206.8 E(85289): 2.9e-53
Smith-Waterman score: 1278; 97.4% identity (99.0% similar) in 194 aa overlap (92-283:19-212)
70 80 90 100 110
pF1KE0 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN--KILTASGDGTCALWDVESGQLLQ
:::.. .::::::::::::::::::::::
XP_016 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ
10 20 30 40
120 130 140 150 160 170
pF1KE0 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYP
50 60 70 80 90 100
180 190 200 210 220 230
pF1KE0 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV
110 120 130 140 150 160
240 250 260 270 280
pF1KE0 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
::::::::::::::::::::::::::::::::::::::::::::
XP_016 WDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
170 180 190 200 210
>>XP_011519465 (OMIM: 604447) PREDICTED: guanine nucleot (301 aa)
initn: 1273 init1: 1273 opt: 1278 Z-score: 1075.3 bits: 206.9 E(85289): 3.7e-53
Smith-Waterman score: 1436; 76.7% identity (76.7% similar) in 301 aa overlap (53-283:1-301)
30 40 50 60 70 80
pF1KE0 KGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSS
::::::::::::::::::::::::::::::
XP_011 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSS
10 20 30
90
pF1KE0 QDGKVIVWDSFTTNK---------------------------------------------
:::::::::::::::
XP_011 QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM
40 50 60 70 80 90
100 110 120 130
pF1KE0 -------------------------ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD
:::::::::::::::::::::::::::::::::::
XP_011 AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD
100 110 120 130 140 150
140 150 160 170 180 190
pF1KE0 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFASGSDDAT
160 170 180 190 200 210
200 210 220 230 240 250
pF1KE0 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF
220 230 240 250 260 270
260 270 280
pF1KE0 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
:::::::::::::::::::::::::::::::
XP_011 GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
280 290 300
>>NP_006569 (OMIM: 604447) guanine nucleotide-binding pr (353 aa)
initn: 1273 init1: 1273 opt: 1278 Z-score: 1074.5 bits: 207.0 E(85289): 4.1e-53
Smith-Waterman score: 1525; 77.8% identity (77.8% similar) in 315 aa overlap (39-283:39-353)
10 20 30 40 50 60
pF1KE0 NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLC
::::::::::::::::::::::::::::::
NP_006 NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLC
10 20 30 40 50 60
70 80 90
pF1KE0 MDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------------------------------
:::::::::::::::::::::::::::::
NP_006 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK
70 80 90 100 110 120
100 110
pF1KE0 ---------------------------------------ILTASGDGTCALWDVESGQLL
:::::::::::::::::::::
NP_006 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL
130 140 150 160 170 180
120 130 140 150 160 170
pF1KE0 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYY
190 200 210 220 230 240
180 190 200 210 220 230
pF1KE0 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN
250 260 270 280 290 300
240 250 260 270 280
pF1KE0 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_006 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
310 320 330 340 350
>--
initn: 228 init1: 228 opt: 228 Z-score: 209.0 bits: 46.9 E(85289): 6.7e-05
Smith-Waterman score: 228; 100.0% identity (100.0% similar) in 38 aa overlap (1-38:1-38)
10 20 30 40 50 60
pF1KE0 MATEGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
::::::::::::::::::::::::::::::::::::::
NP_006 MATEGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKILTASGDGTCALWDVESGQLLQS
NP_006 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI
70 80 90 100 110 120
>>XP_011519464 (OMIM: 604447) PREDICTED: guanine nucleot (353 aa)
initn: 1273 init1: 1273 opt: 1278 Z-score: 1074.5 bits: 207.0 E(85289): 4.1e-53
Smith-Waterman score: 1525; 77.8% identity (77.8% similar) in 315 aa overlap (39-283:39-353)
10 20 30 40 50 60
pF1KE0 NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLC
::::::::::::::::::::::::::::::
XP_011 SVCPSYTSTQLGRLRPSPTSTTGWLELQDMHQVAERVEALGQFVMKTRRTLKGHGNKVLC
10 20 30 40 50 60
70 80 90
pF1KE0 MDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------------------------------
:::::::::::::::::::::::::::::
XP_011 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK
70 80 90 100 110 120
100 110
pF1KE0 ---------------------------------------ILTASGDGTCALWDVESGQLL
:::::::::::::::::::::
XP_011 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL
130 140 150 160 170 180
120 130 140 150 160 170
pF1KE0 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYY
190 200 210 220 230 240
180 190 200 210 220 230
pF1KE0 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN
250 260 270 280 290 300
240 250 260 270 280
pF1KE0 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
:::::::::::::::::::::::::::::::::::::::::::::
XP_011 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
310 320 330 340 350
>>NP_057278 (OMIM: 604447) guanine nucleotide-binding pr (395 aa)
initn: 1273 init1: 1273 opt: 1278 Z-score: 1073.9 bits: 207.1 E(85289): 4.4e-53
Smith-Waterman score: 1525; 77.8% identity (77.8% similar) in 315 aa overlap (39-283:81-395)
10 20 30 40 50 60
pF1KE0 NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLC
::::::::::::::::::::::::::::::
NP_057 NETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLC
60 70 80 90 100 110
70 80 90
pF1KE0 MDWCKDKRRIVSSSQDGKVIVWDSFTTNK-------------------------------
:::::::::::::::::::::::::::::
NP_057 MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK
120 130 140 150 160 170
100 110
pF1KE0 ---------------------------------------ILTASGDGTCALWDVESGQLL
:::::::::::::::::::::
NP_057 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL
180 190 200 210 220 230
120 130 140 150 160 170
pF1KE0 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYY
240 250 260 270 280 290
180 190 200 210 220 230
pF1KE0 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN
300 310 320 330 340 350
240 250 260 270 280
pF1KE0 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
:::::::::::::::::::::::::::::::::::::::::::::
NP_057 VWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
360 370 380 390
>--
initn: 228 init1: 228 opt: 228 Z-score: 208.4 bits: 46.9 E(85289): 7.2e-05
Smith-Waterman score: 228; 100.0% identity (100.0% similar) in 38 aa overlap (1-38:43-80)
10 20 30
pF1KE0 MATEGLHENETLASLKSEAESLKGKLEEER
::::::::::::::::::::::::::::::
NP_057 SCDKCFKQRALRPVFKKSQQLSYCSTCAEIMATEGLHENETLASLKSEAESLKGKLEEER
20 30 40 50 60 70
40 50 60 70 80 90
pF1KE0 AKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW
::::::::
NP_057 AKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW
80 90 100 110 120 130
>>NP_001269467 (OMIM: 139380,613065,616973) guanine nucl (240 aa)
initn: 882 init1: 615 opt: 776 Z-score: 662.7 bits: 130.3 E(85289): 3.6e-30
Smith-Waterman score: 776; 57.2% identity (81.8% similar) in 187 aa overlap (96-282:55-239)
70 80 90 100 110 120
pF1KE0 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKILTASGDGTCALWDVESGQLLQSFHGHG
:.:.:.::: ::::::.:.:: .: ::
NP_001 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHT
30 40 50 60 70 80
130 140 150 160 170 180
pF1KE0 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRYYPSGDAFA
.::. :.:::. ::::.:: .: .::.: :.: :.: ::::::.. ..:.:.:::
NP_001 GDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA
90 100 110 120 130 140
190 200 210 220 230 240
pF1KE0 SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG
.:::::::::.:::::.:. ::...:: : .::.:: :::::.:::.:.. ::::.::.
NP_001 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA
150 160 170 180 190 200
250 260 270 280
pF1KE0 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
.:...: ::.:::: : :. :: : .:::: :..:
NP_001 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
210 220 230 240
>>XP_016856549 (OMIM: 139380,613065,616973) PREDICTED: g (340 aa)
initn: 1199 init1: 615 opt: 776 Z-score: 660.9 bits: 130.4 E(85289): 4.5e-30
Smith-Waterman score: 860; 43.8% identity (63.8% similar) in 315 aa overlap (35-282:27-339)
10 20 30 40 50 60
pF1KE0 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGN
:. : :... .. .:.. :.:::::.::
XP_016 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLA
10 20 30 40 50
70 80 90
pF1KE0 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------
:. : : :.: .::.:::::.:.:::.::::
XP_016 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG
60 70 80 90 100 110
100 110
pF1KE0 ----------------------------------------ILTASGDGTCALWDVESGQL
:.:.::: ::::::.:.::
XP_016 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRY
.: :: .::. :.:::. ::::.:: .: .::.: :.: :.: ::::::.. .
XP_016 TTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE0 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI
.:.:.:::.:::::::::.:::::.:. ::...:: : .::.:: :::::.:::.:..
XP_016 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC
240 250 260 270 280 290
240 250 260 270 280
pF1KE0 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
::::.::..:...: ::.:::: : :. :: : .:::: :..:
XP_016 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
300 310 320 330 340
>>XP_016856550 (OMIM: 139380,613065,616973) PREDICTED: g (340 aa)
initn: 1199 init1: 615 opt: 776 Z-score: 660.9 bits: 130.4 E(85289): 4.5e-30
Smith-Waterman score: 860; 43.8% identity (63.8% similar) in 315 aa overlap (35-282:27-339)
10 20 30 40 50 60
pF1KE0 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGN
:. : :... .. .:.. :.:::::.::
XP_016 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLA
10 20 30 40 50
70 80 90
pF1KE0 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------
:. : : :.: .::.:::::.:.:::.::::
XP_016 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG
60 70 80 90 100 110
100 110
pF1KE0 ----------------------------------------ILTASGDGTCALWDVESGQL
:.:.::: ::::::.:.::
XP_016 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRY
.: :: .::. :.:::. ::::.:: .: .::.: :.: :.: ::::::.. .
XP_016 TTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE0 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI
.:.:.:::.:::::::::.:::::.:. ::...:: : .::.:: :::::.:::.:..
XP_016 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC
240 250 260 270 280 290
240 250 260 270 280
pF1KE0 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
::::.::..:...: ::.:::: : :. :: : .:::: :..:
XP_016 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
300 310 320 330 340
>>XP_016856548 (OMIM: 139380,613065,616973) PREDICTED: g (340 aa)
initn: 1199 init1: 615 opt: 776 Z-score: 660.9 bits: 130.4 E(85289): 4.5e-30
Smith-Waterman score: 860; 43.8% identity (63.8% similar) in 315 aa overlap (35-282:27-339)
10 20 30 40 50 60
pF1KE0 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGN
:. : :... .. .:.. :.:::::.::
XP_016 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLA
10 20 30 40 50
70 80 90
pF1KE0 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------
:. : : :.: .::.:::::.:.:::.::::
XP_016 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG
60 70 80 90 100 110
100 110
pF1KE0 ----------------------------------------ILTASGDGTCALWDVESGQL
:.:.::: ::::::.:.::
XP_016 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRY
.: :: .::. :.:::. ::::.:: .: .::.: :.: :.: ::::::.. .
XP_016 TTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE0 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI
.:.:.:::.:::::::::.:::::.:. ::...:: : .::.:: :::::.:::.:..
XP_016 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC
240 250 260 270 280 290
240 250 260 270 280
pF1KE0 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
::::.::..:...: ::.:::: : :. :: : .:::: :..:
XP_016 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
300 310 320 330 340
>>NP_002065 (OMIM: 139380,613065,616973) guanine nucleot (340 aa)
initn: 1199 init1: 615 opt: 776 Z-score: 660.9 bits: 130.4 E(85289): 4.5e-30
Smith-Waterman score: 860; 43.8% identity (63.8% similar) in 315 aa overlap (35-282:27-339)
10 20 30 40 50 60
pF1KE0 GLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGN
:. : :... .. .:.. :.:::::.::
NP_002 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLA
10 20 30 40 50
70 80 90
pF1KE0 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK---------------------------
:. : : :.: .::.:::::.:.:::.::::
NP_002 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG
60 70 80 90 100 110
100 110
pF1KE0 ----------------------------------------ILTASGDGTCALWDVESGQL
:.:.::: ::::::.:.::
NP_002 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE0 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDINSVRY
.: :: .::. :.:::. ::::.:: .: .::.: :.: :.: ::::::.. .
NP_002 TTTFTGHTGDVMSLSLAPDTR--LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF
180 190 200 210 220 230
180 190 200 210 220 230
pF1KE0 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI
.:.:.:::.:::::::::.:::::.:. ::...:: : .::.:: :::::.:::.:..
NP_002 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC
240 250 260 270 280 290
240 250 260 270 280
pF1KE0 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA
::::.::..:...: ::.:::: : :. :: : .:::: :..:
NP_002 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN
300 310 320 330 340
283 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:55:07 2016 done: Fri Nov 4 02:55:08 2016
Total Scan time: 6.880 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]