Result of FASTA (omim) for
pF1KE0101
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0101, 182 aa
1>>>pF1KE0101 182 - 182 aa - 182 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8914+/-0.000385; mu= 14.3843+/- 0.024
mean_var=52.5005+/-10.887, 0's: 0 Z-trim(111.1): 18 B-trim: 287 in 1/51
Lambda= 0.177008
statistics sampled from 19584 (19601) to 19584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.23), width: 16
Scan time: 5.340
The best scores are: opt bits E(85289)
NP_057310 (OMIM: 606932) vacuolar protein sorting- ( 182) 1206 315.8 2.5e-86
XP_006719523 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
XP_011536786 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
XP_016874947 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
XP_006719522 (OMIM: 606932) PREDICTED: vacuolar pr ( 183) 1199 314.0 8.6e-86
NP_476528 (OMIM: 606932) vacuolar protein sorting- ( 186) 1199 314.0 8.7e-86
XP_016874946 (OMIM: 606932) PREDICTED: vacuolar pr ( 214) 1199 314.0 9.9e-86
NP_001269079 (OMIM: 606932) vacuolar protein sorti ( 214) 1199 314.0 9.9e-86
NP_001269080 (OMIM: 606932) vacuolar protein sorti ( 91) 453 123.3 1e-28
XP_016874948 (OMIM: 606932) PREDICTED: vacuolar pr ( 123) 446 121.6 4.7e-28
XP_011539754 (OMIM: 611578) PREDICTED: ferric-chel ( 503) 124 39.7 0.009
>>NP_057310 (OMIM: 606932) vacuolar protein sorting-asso (182 aa)
initn: 1206 init1: 1206 opt: 1206 Z-score: 1670.9 bits: 315.8 E(85289): 2.5e-86
Smith-Waterman score: 1206; 99.5% identity (99.5% similar) in 182 aa overlap (1-182:1-182)
10 20 30 40 50 60
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKSE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_057 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
130 140 150 160 170 180
pF1KE0 KP
::
NP_057 KP
>>XP_006719523 (OMIM: 606932) PREDICTED: vacuolar protei (183 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1661.2 bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)
10 20 30 40 50
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
130 140 150 160 170 180
180
pF1KE0 KKP
:::
XP_006 KKP
>>XP_011536786 (OMIM: 606932) PREDICTED: vacuolar protei (183 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1661.2 bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)
10 20 30 40 50
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
130 140 150 160 170 180
180
pF1KE0 KKP
:::
XP_011 KKP
>>XP_016874947 (OMIM: 606932) PREDICTED: vacuolar protei (183 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1661.2 bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)
10 20 30 40 50
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
130 140 150 160 170 180
180
pF1KE0 KKP
:::
XP_016 KKP
>>XP_006719522 (OMIM: 606932) PREDICTED: vacuolar protei (183 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1661.2 bits: 314.0 E(85289): 8.6e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:3-183)
10 20 30 40 50
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEY
130 140 150 160 170 180
180
pF1KE0 KKP
:::
XP_006 KKP
>>NP_476528 (OMIM: 606932) vacuolar protein sorting-asso (186 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1661.1 bits: 314.0 E(85289): 8.7e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:6-186)
10 20 30 40 50
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE0 HKSEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_476 HKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
130 140 150 160 170 180
180
pF1KE0 IEYKKP
::::::
NP_476 IEYKKP
>>XP_016874946 (OMIM: 606932) PREDICTED: vacuolar protei (214 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1660.2 bits: 314.0 E(85289): 9.9e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:34-214)
10 20 30
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
::::::::::::::::::::::::::::::
XP_016 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
XP_016 PWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFV
130 140 150 160 170 180
160 170 180
pF1KE0 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
:::::::::::::::::::::::::::::::
XP_016 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
190 200 210
>>NP_001269079 (OMIM: 606932) vacuolar protein sorting-a (214 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1660.2 bits: 314.0 E(85289): 9.9e-86
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:34-214)
10 20 30
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
::::::::::::::::::::::::::::::
NP_001 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_001 PWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFV
130 140 150 160 170 180
160 170 180
pF1KE0 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
:::::::::::::::::::::::::::::::
NP_001 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
190 200 210
>>NP_001269080 (OMIM: 606932) vacuolar protein sorting-a (91 aa)
initn: 458 init1: 446 opt: 453 Z-score: 636.4 bits: 123.3 E(85289): 1e-28
Smith-Waterman score: 453; 76.9% identity (85.7% similar) in 91 aa overlap (1-91:1-86)
10 20 30 40 50 60
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKSE
:::::. .: ... : . :. :: .
NP_001 GDFDEK-HY---SIICVDGYP-GFYSGHLCVSANWR
70 80 90
130 140 150 160 170 180
pF1KE0 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
>>XP_016874948 (OMIM: 606932) PREDICTED: vacuolar protei (123 aa)
initn: 451 init1: 439 opt: 446 Z-score: 624.7 bits: 121.6 E(85289): 4.7e-28
Smith-Waterman score: 446; 76.7% identity (85.6% similar) in 90 aa overlap (2-91:34-118)
10 20 30
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
::::::::::::::::::::::::::::::
XP_016 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
::::::::::::::::::::::::::::::::::. .: ... : . :. :: .
XP_016 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDEK-HY---SIICVDGYP-GFYSGHLCV
70 80 90 100 110
100 110 120 130 140 150
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
XP_016 SANWR
120
182 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:12:36 2016 done: Fri Nov 4 03:12:37 2016
Total Scan time: 5.340 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]