FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0101, 182 aa
  1>>>pF1KE0101 182 - 182 aa - 182 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4145+/-0.000863; mu= 11.1933+/- 0.052
 mean_var=49.6863+/-10.160, 0's: 0 Z-trim(104.2): 8  B-trim: 53 in 1/49
 Lambda= 0.181952
 statistics sampled from 7758 (7761) to 7758 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.238), width:  16
 Scan time:  1.570

The best scores are:                                      opt bits E(32554)
CCDS41832.1 VPS29 gene_id:51699|Hs108|chr12        ( 182) 1206 324.2 2.8e-89
CCDS53832.1 VPS29 gene_id:51699|Hs108|chr12        ( 186) 1199 322.3   1e-88
CCDS73525.1 VPS29 gene_id:51699|Hs108|chr12        ( 214) 1199 322.3 1.2e-88


>>CCDS41832.1 VPS29 gene_id:51699|Hs108|chr12             (182 aa)
 initn: 1206 init1: 1206 opt: 1206  Z-score: 1716.2  bits: 324.2 E(32554): 2.8e-89
Smith-Waterman score: 1206; 99.5% identity (99.5% similar) in 182 aa overlap (1-182:1-182)

               10        20        30        40        50        60
pF1KE0 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKSE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS41 GDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYK
              130       140       150       160       170       180

         
pF1KE0 KP
       ::
CCDS41 KP
         

>>CCDS53832.1 VPS29 gene_id:51699|Hs108|chr12             (186 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1706.1  bits: 322.3 E(32554): 1e-88
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:6-186)

                   10        20        30        40        50      
pF1KE0     MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDV
               10        20        30        40        50        60

         60        70        80        90       100       110      
pF1KE0 HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHT
               70        80        90       100       110       120

        120       130       140       150       160       170      
pF1KE0 HKSEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVER
              130       140       150       160       170       180

        180  
pF1KE0 IEYKKP
       ::::::
CCDS53 IEYKKP
             

>>CCDS73525.1 VPS29 gene_id:51699|Hs108|chr12             (214 aa)
 initn: 1199 init1: 1199 opt: 1199  Z-score: 1705.1  bits: 322.3 E(32554): 1.2e-88
Smith-Waterman score: 1199; 99.4% identity (99.4% similar) in 181 aa overlap (2-182:34-214)

                                            10        20        30 
pF1KE0                              MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
                                     ::::::::::::::::::::::::::::::
CCDS73 CALRGRDLALAIAGTVSFHGLLRLFRAGHRLVLVLGDLHIPHRCNSLPAKFKKLLVPGKI
            10        20        30        40        50        60   

              40        50        60        70        80        90 
pF1KE0 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVI
            70        80        90       100       110       120   

             100       110       120       130       140       150 
pF1KE0 PWGDMASLALLQRQFDVDILISGHTHKSEAFEHENKFYINPGSATGAYNALETNIIPSFV
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS73 PWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFV
           130       140       150       160       170       180   

             160       170       180  
pF1KE0 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
       :::::::::::::::::::::::::::::::
CCDS73 LMDIQASTVVTYVYQLIGDDVKVERIEYKKP
           190       200       210    




182 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:12:35 2016 done: Fri Nov  4 03:12:36 2016
 Total Scan time:  1.570 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]