Result of FASTA (omim) for
pF1KE0097
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0097, 283 aa
1>>>pF1KE0097 283 - 283 aa - 283 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5502+/-0.000298; mu= 14.6227+/- 0.019
mean_var=66.8760+/-13.339, 0's: 0 Z-trim(117.9): 55 B-trim: 142 in 1/51
Lambda= 0.156834
statistics sampled from 30215 (30270) to 30215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.355), width: 16
Scan time: 7.530
The best scores are: opt bits E(85289)
NP_005181 (OMIM: 123838) cyclin-C isoform a [Homo ( 283) 1917 442.0 6.2e-124
XP_006715657 (OMIM: 123838) PREDICTED: cyclin-C is ( 282) 1798 415.0 7.8e-116
NP_001013417 (OMIM: 123838) cyclin-C isoform b [Ho ( 198) 1353 314.3 1.2e-85
XP_011534534 (OMIM: 123838) PREDICTED: cyclin-C is ( 153) 961 225.5 4.7e-59
XP_016866925 (OMIM: 123838) PREDICTED: cyclin-C is ( 147) 960 225.3 5.3e-59
XP_011535577 (OMIM: 603544) PREDICTED: cyclin-K is ( 580) 265 68.3 3.8e-11
NP_001092872 (OMIM: 603544) cyclin-K [Homo sapiens ( 580) 265 68.3 3.8e-11
XP_005268211 (OMIM: 603544) PREDICTED: cyclin-K is ( 580) 265 68.3 3.8e-11
NP_112199 (OMIM: 613482) cyclin-L2 isoform A [Homo ( 520) 241 62.9 1.5e-09
NP_001295114 (OMIM: 613384) cyclin-L1 isoform 2 [H ( 428) 238 62.1 2e-09
XP_006713773 (OMIM: 613384) PREDICTED: cyclin-L1 i ( 493) 238 62.2 2.3e-09
NP_064703 (OMIM: 613384) cyclin-L1 isoform 1 [Homo ( 526) 238 62.2 2.4e-09
NP_001232 (OMIM: 603862) cyclin-T2 isoform a [Homo ( 663) 236 61.8 4.1e-09
NP_490595 (OMIM: 603862) cyclin-T2 isoform b [Homo ( 730) 236 61.8 4.4e-09
NP_001231 (OMIM: 143055) cyclin-T1 isoform a [Homo ( 726) 223 58.9 3.4e-08
XP_005277977 (OMIM: 300707,300708) PREDICTED: cycl ( 238) 211 55.9 8.4e-08
NP_001124469 (OMIM: 300707,300708) cyclin-related ( 228) 210 55.7 9.4e-08
NP_689487 (OMIM: 300707,300708) cyclin-related pro ( 248) 210 55.7 1e-07
XP_005277978 (OMIM: 300707,300708) PREDICTED: cycl ( 218) 204 54.3 2.3e-07
XP_011529516 (OMIM: 300707,300708) PREDICTED: cycl ( 206) 200 53.4 4.1e-07
XP_011529517 (OMIM: 300707,300708) PREDICTED: cycl ( 206) 200 53.4 4.1e-07
XP_011540518 (OMIM: 613482) PREDICTED: cyclin-L2 i ( 553) 190 51.3 4.7e-06
XP_011511313 (OMIM: 613384) PREDICTED: cyclin-L1 i ( 371) 184 49.9 8.5e-06
XP_005247705 (OMIM: 613384) PREDICTED: cyclin-L1 i ( 371) 184 49.9 8.5e-06
NP_001034666 (OMIM: 613482) cyclin-L2 isoform B [H ( 226) 165 45.5 0.00011
NP_001230 (OMIM: 601953) cyclin-H isoform 1 [Homo ( 323) 164 45.4 0.00017
XP_011542008 (OMIM: 601953) PREDICTED: cyclin-H is ( 325) 164 45.4 0.00017
XP_005248684 (OMIM: 601953) PREDICTED: cyclin-H is ( 329) 164 45.4 0.00018
NP_001186118 (OMIM: 601953) cyclin-H isoform 2 [Ho ( 270) 162 44.9 0.0002
XP_016865503 (OMIM: 601953) PREDICTED: cyclin-H is ( 272) 162 44.9 0.0002
XP_005248686 (OMIM: 601953) PREDICTED: cyclin-H is ( 276) 162 44.9 0.00021
NP_001264771 (OMIM: 143055) cyclin-T1 isoform b [H ( 184) 150 42.1 0.00096
XP_016860717 (OMIM: 603862) PREDICTED: cyclin-T2 i ( 642) 146 41.4 0.0053
XP_016860716 (OMIM: 603862) PREDICTED: cyclin-T2 i ( 709) 146 41.4 0.0058
XP_016875686 (OMIM: 143055) PREDICTED: cyclin-T1 i ( 646) 143 40.7 0.0086
>>NP_005181 (OMIM: 123838) cyclin-C isoform a [Homo sapi (283 aa)
initn: 1917 init1: 1917 opt: 1917 Z-score: 2346.0 bits: 442.0 E(85289): 6.2e-124
Smith-Waterman score: 1917; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:1-283)
10 20 30 40 50 60
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
190 200 210 220 230 240
250 260 270 280
pF1KE0 WKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
:::::::::::::::::::::::::::::::::::::::::::
NP_005 WKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
250 260 270 280
>>XP_006715657 (OMIM: 123838) PREDICTED: cyclin-C isofor (282 aa)
initn: 1798 init1: 1798 opt: 1798 Z-score: 2200.5 bits: 415.0 E(85289): 7.8e-116
Smith-Waterman score: 1798; 100.0% identity (100.0% similar) in 265 aa overlap (1-265:1-265)
10 20 30 40 50 60
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQ
190 200 210 220 230 240
250 260 270 280
pF1KE0 WKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
:::::::::::::::::::::::::
XP_006 WKNFDERKEMATILSKMPKPKPPPNRNSLSDSPLVAGPEAAR
250 260 270 280
>>NP_001013417 (OMIM: 123838) cyclin-C isoform b [Homo s (198 aa)
initn: 1353 init1: 1353 opt: 1353 Z-score: 1658.8 bits: 314.3 E(85289): 1.2e-85
Smith-Waterman score: 1353; 100.0% identity (100.0% similar) in 198 aa overlap (86-283:1-198)
60 70 80 90 100 110
pF1KE0 KLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSV
::::::::::::::::::::::::::::::
NP_001 MAPTCVFLASKVEEFGVVSNTRLIAAATSV
10 20 30
120 130 140 150 160 170
pF1KE0 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPL
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE0 AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFAELSVDMEKILEIIRVIL
100 110 120 130 140 150
240 250 260 270 280
pF1KE0 KLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
160 170 180 190
>>XP_011534534 (OMIM: 123838) PREDICTED: cyclin-C isofor (153 aa)
initn: 960 init1: 960 opt: 961 Z-score: 1181.2 bits: 225.5 E(85289): 4.7e-59
Smith-Waterman score: 961; 99.3% identity (99.3% similar) in 148 aa overlap (1-148:1-147)
10 20 30 40 50 60
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
:::::::::::::::::::::::::: :
XP_011 SYAFPKEFPYRMNHILECEFYLLELM-CVADVTL
130 140 150
>>XP_016866925 (OMIM: 123838) PREDICTED: cyclin-C isofor (147 aa)
initn: 960 init1: 960 opt: 960 Z-score: 1180.2 bits: 225.3 E(85289): 5.3e-59
Smith-Waterman score: 960; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)
10 20 30 40 50 60
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIV
::::::::::::::::::::::::::
XP_016 SYAFPKEFPYRMNHILECEFYLLELMM
130 140
>>XP_011535577 (OMIM: 603544) PREDICTED: cyclin-K isofor (580 aa)
initn: 204 init1: 127 opt: 265 Z-score: 321.1 bits: 68.3 E(85289): 3.8e-11
Smith-Waterman score: 305; 30.1% identity (55.7% similar) in 289 aa overlap (14-282:24-301)
10 20 30 40
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKE--RQKDLKFLSEEEYWKLQIFFTNVI
: ::.:: . . . : .: .: . : :
XP_011 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARF---I
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 QALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRL
.: .: :. ...::. .::.::: .:.:.. . . :.:::.:::: . .
XP_011 FDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPK-KCKDI
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IAAATSVLKTRFSYAF---PKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD
: .: :.:. : ::: ... : ::. . : : :::. ::.:...
XP_011 IKTARSLLNDVQFGQFGDDPKE------EVMVLERILLQTIKFDLQVEHPYQFLLKYAKQ
120 130 140 150 160 170
170 180 190 200 210
pF1KE0 M-GQEDM---LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA---CVVQQKD------
. :... :. .:: .:::. : : : . : .::.: ...: : . ..
XP_011 LKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 ARQWFAELSVDME-KILE-IIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQ
:.:. .. :. .:: : . :: :: : :. . .. :.. :. .: :. :
XP_011 YRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ-QMPHHTPHQLQQPPSLQPTPQVPQVQ
240 250 260 270 280
280
pF1KE0 GPNGSQNSSYSQS
. ::.: ::
XP_011 QSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPSSPRQVKRAVVVSPKEENKAAE
290 300 310 320 330 340
>>NP_001092872 (OMIM: 603544) cyclin-K [Homo sapiens] (580 aa)
initn: 204 init1: 127 opt: 265 Z-score: 321.1 bits: 68.3 E(85289): 3.8e-11
Smith-Waterman score: 305; 30.1% identity (55.7% similar) in 289 aa overlap (14-282:24-301)
10 20 30 40
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKE--RQKDLKFLSEEEYWKLQIFFTNVI
: ::.:: . . . : .: .: . : :
NP_001 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARF---I
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 QALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRL
.: .: :. ...::. .::.::: .:.:.. . . :.:::.:::: . .
NP_001 FDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPK-KCKDI
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IAAATSVLKTRFSYAF---PKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD
: .: :.:. : ::: ... : ::. . : : :::. ::.:...
NP_001 IKTARSLLNDVQFGQFGDDPKE------EVMVLERILLQTIKFDLQVEHPYQFLLKYAKQ
120 130 140 150 160 170
170 180 190 200 210
pF1KE0 M-GQEDM---LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA---CVVQQKD------
. :... :. .:: .:::. : : : . : .::.: ...: : . ..
NP_001 LKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 ARQWFAELSVDME-KILE-IIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQ
:.:. .. :. .:: : . :: :: : :. . .. :.. :. .: :. :
NP_001 YRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ-QMPHHTPHQLQQPPSLQPTPQVPQVQ
240 250 260 270 280
280
pF1KE0 GPNGSQNSSYSQS
. ::.: ::
NP_001 QSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPSSPRQVKRAVVVSPKEENKAAE
290 300 310 320 330 340
>>XP_005268211 (OMIM: 603544) PREDICTED: cyclin-K isofor (580 aa)
initn: 204 init1: 127 opt: 265 Z-score: 321.1 bits: 68.3 E(85289): 3.8e-11
Smith-Waterman score: 305; 30.1% identity (55.7% similar) in 289 aa overlap (14-282:24-301)
10 20 30 40
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKE--RQKDLKFLSEEEYWKLQIFFTNVI
: ::.:: . . . : .: .: . : :
XP_005 MKENKENSSPSVTSANLDHTKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARF---I
10 20 30 40 50
50 60 70 80 90 100
pF1KE0 QALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRL
.: .: :. ...::. .::.::: .:.:.. . . :.:::.:::: . .
XP_005 FDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPK-KCKDI
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE0 IAAATSVLKTRFSYAF---PKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQD
: .: :.:. : ::: ... : ::. . : : :::. ::.:...
XP_005 IKTARSLLNDVQFGQFGDDPKE------EVMVLERILLQTIKFDLQVEHPYQFLLKYAKQ
120 130 140 150 160 170
170 180 190 200 210
pF1KE0 M-GQEDM---LLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVA---CVVQQKD------
. :... :. .:: .:::. : : : . : .::.: ...: : . ..
XP_005 LKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPM
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE0 ARQWFAELSVDME-KILE-IIRVILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQ
:.:. .. :. .:: : . :: :: : :. . .. :.. :. .: :. :
XP_005 YRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQ-QMPHHTPHQLQQPPSLQPTPQVPQVQ
240 250 260 270 280
280
pF1KE0 GPNGSQNSSYSQS
. ::.: ::
XP_005 QSQPSQSSEPSQPQQKDPQQPAQQQQPAQQPKKPSPQPSSPRQVKRAVVVSPKEENKAAE
290 300 310 320 330 340
>>NP_112199 (OMIM: 613482) cyclin-L2 isoform A [Homo sap (520 aa)
initn: 259 init1: 113 opt: 241 Z-score: 292.5 bits: 62.9 E(85289): 1.5e-09
Smith-Waterman score: 276; 30.9% identity (56.4% similar) in 220 aa overlap (40-242:77-288)
10 20 30 40 50 60
pF1KE0 HYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHLKLRQQVIATATVYF
:.. ..::: : :.: : ..::. : :
NP_112 ITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLF
50 60 70 80 90 100
70 80 90 100 110 120
pF1KE0 KRFYARYSL--KSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKE
.::. :. .:.. : :: :: ::::.:: : : . .:.. :. :.
NP_112 QRFFYTKSFVKHSMEHVSMA--CVHLASKIEE-----APRRIRDVINVFH-RLRQLRDKK
110 120 130 140 150
130 140 150 160 170
pF1KE0 FPYRM----------NHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE--DMLLPL
: . :.:.. : .:. . :. : ::.. ...:.: . : . :.
NP_112 KPVPLLLDQDYVNLKNQIIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQHLVQT
160 170 180 190 200 210
180 190 200 210 220 230
pF1KE0 AWRIVNDTYRTDLCLLYPPFMIALACLHVACV---VQQKDARQWFAELSVDMEKILEIIR
.: .::. :::. . . : :: ::...: . . .:: ... :.: ::
NP_112 SWNYMNDSLRTDVFVRFQPESIACACIYLAARTLEIPLPNRPHWFLLFGATEEEIQEICL
220 230 240 250 260 270
240 250 260 270 280
pF1KE0 VILKLYEQWKNFDERKEMATILSKMPKPKPPPNSEGEQGPNGSQNSSYSQS
::.:: . :
NP_112 KILQLYARKKVDLTHLEGEVEKRKHAIEEAKAQARGLLPGGTQVLDGTSGFSPAPKLVES
280 290 300 310 320 330
>>NP_001295114 (OMIM: 613384) cyclin-L1 isoform 2 [Homo (428 aa)
initn: 255 init1: 115 opt: 238 Z-score: 290.1 bits: 62.1 E(85289): 2e-09
Smith-Waterman score: 272; 26.9% identity (55.2% similar) in 279 aa overlap (26-278:71-342)
10 20 30 40 50
pF1KE0 MAGNFWQSSHYLQWILDKQDLLKERQKDLKFLSEEEYWKLQIFFTNVIQALGEHL
: : . :: . :.:. ..::: : :
NP_001 LIGDRLYSEVSLTIDHSLIPEERLSPTPSMQDGLDLPSETD---LRILGCELIQAAGILL
50 60 70 80 90
60 70 80 90 100
pF1KE0 KLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEE--------FGVVSNTR
.: : ..::. : :.::. :. . . ..: .:. ::::.:: ..: . :
NP_001 RLPQVAMATGQVLFHRFFYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLR
100 110 120 130 140 150
110 120 130 140 150 160
pF1KE0 LIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMG
. . .: . ... :.... : .:. . :. : ::.. ...:.: .
NP_001 QLRGK----RTPSPLILDQNYINTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLE
160 170 180 190 200 210
170 180 190 200 210 220
pF1KE0 QE--DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKD--AR-QWFAELSV
: . :. :: .::. ::.. . . : :: ::...: . : .: .:: ...
NP_001 CERNQTLVQTAWNYMNDSLRTNVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGT
220 230 240 250 260 270
230 240 250 260
pF1KE0 DMEKILEIIRVILKLYEQWK-NFD------ERKEMATILSKM------PKPKPPPNSEGE
:.: :: :.:: . : :.. :....: .:. : : .. :
NP_001 TEEEIQEICIETLRLYTRKKPNYELLEKEVEKRKVALQEAKLKAKGLNPDGTPALSTLGG
280 290 300 310 320 330
270 280
pF1KE0 QGPNGSQNSSYSQS
.: .. .:
NP_001 FSPASKPSSPREVKAEEKSPISINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRNSRSAS
340 350 360 370 380 390
283 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:15:53 2016 done: Sat Nov 5 02:15:54 2016
Total Scan time: 7.530 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]