Result of FASTA (ccds) for
pF1KE0085
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0085, 1417 aa
1>>>pF1KE0085 1417 - 1417 aa - 1417 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 14.0738+/-0.00183; mu= -15.9655+/- 0.107
mean_var=585.4364+/-129.232, 0's: 0 Z-trim(108.2): 251 B-trim: 141 in 1/51
Lambda= 0.053007
statistics sampled from 9853 (10059) to 9853 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.309), width: 16
Scan time: 5.040
The best scores are: opt bits E(32554)
CCDS76180.1 CCDC18 gene_id:343099|Hs108|chr1 (1454) 8044 632.0 3.7e-180
>>CCDS76180.1 CCDC18 gene_id:343099|Hs108|chr1 (1454 aa)
initn: 4943 init1: 4943 opt: 8044 Z-score: 3347.9 bits: 632.0 E(32554): 3.7e-180
Smith-Waterman score: 8044; 99.9% identity (99.9% similar) in 1295 aa overlap (119-1413:1-1294)
90 100 110 120 130 140
pF1KE0 RERVRGFLTQTRVRSAQSPGGSLPSDDLGEMESSSSDYYNKDNEEESLLANVASLRHELK
::::::::::::::::::::::::::::::
CCDS76 MESSSSDYYNKDNEEESLLANVASLRHELK
10 20 30
150 160 170 180 190 200
pF1KE0 ITEWSLQSLGEELSSVSPSENSDYAPNPSRSEKLILDVQPSHPGLLNYSPYENVCKISGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ITEWSLQSLGEELSSVSPSENSDYAPNPSRSEKLILDVQPSHPGLLNYSPYENVCKISGS
40 50 60 70 80 90
210 220 230 240 250 260
pF1KE0 STDFQKKPRDKMFSSSAPVDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 STDFQKKPRDKMFSSSAPVDQEIKSLREKLNKLRQQNACLVTQNHSLMTKFESIHFELTQ
100 110 120 130 140 150
270 280 290 300 310 320
pF1KE0 SRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSL
160 170 180 190 200 210
330 340 350 360 370 380
pF1KE0 QESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEE
220 230 240 250 260 270
390 400 410 420 430 440
pF1KE0 EILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EILERNLTNCEKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVM
280 290 300 310 320 330
450 460 470 480 490 500
pF1KE0 AQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRV
340 350 360 370 380 390
510 520 530 540 550 560
pF1KE0 ELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ELRSLEKIISQLPLKRELFGFKSYLSKYQMSSFSNKEDRCIGCCEANKLVISELRIKLAI
400 410 420 430 440 450
570 580 590 600 610 620
pF1KE0 KEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQVAESVKDQNQHTM
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS76 KEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEPVKLGGHQV-ESVKDQNQHTM
460 470 480 490 500
630 640 650 660 670 680
pF1KE0 NKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 NKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKL
510 520 530 540 550 560
690 700 710 720 730 740
pF1KE0 ESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI
570 580 590 600 610 620
750 760 770 780 790 800
pF1KE0 CLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 CLAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESL
630 640 650 660 670 680
810 820 830 840 850 860
pF1KE0 DRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 DRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGN
690 700 710 720 730 740
870 880 890 900 910 920
pF1KE0 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGEL
750 760 770 780 790 800
930 940 950 960 970 980
pF1KE0 EDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EDTQTKLEKQVSKLEQELQKQRESSAEKLRKMEEKCESAAHEADLKRQKVIELTGTARQV
810 820 830 840 850 860
990 1000 1010 1020 1030 1040
pF1KE0 KIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQTKTELEKKTNAVKELEKLQ
870 880 890 900 910 920
1050 1060 1070 1080 1090 1100
pF1KE0 HSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLT
930 940 950 960 970 980
1110 1120 1130 1140 1150 1160
pF1KE0 AELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 AELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLE
990 1000 1010 1020 1030 1040
1170 1180 1190 1200 1210 1220
pF1KE0 GTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GTLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMK
1050 1060 1070 1080 1090 1100
1230 1240 1250 1260 1270 1280
pF1KE0 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EMESVMKEQEQYIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSS
1110 1120 1130 1140 1150 1160
1290 1300 1310 1320 1330 1340
pF1KE0 ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ELEDMKQLSKEKDAHGNHLAEELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMI
1170 1180 1190 1200 1210 1220
1350 1360 1370 1380 1390 1400
pF1KE0 SHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SHQENHAKWKISADSQKSSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANE
1230 1240 1250 1260 1270 1280
1410
pF1KE0 ALLTKGENV
:::::
CCDS76 ALLTKESELTRLQAKISGHEKAEDIKFLPAPFTSPTEIMPDVQDPKFAKCFHTSFSKCTK
1290 1300 1310 1320 1330 1340
1417 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:45:31 2016 done: Fri Nov 4 03:45:32 2016
Total Scan time: 5.040 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]