Result of FASTA (ccds) for
pF1KE0073
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0073, 1320 aa
1>>>pF1KE0073 1320 - 1320 aa - 1320 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.9202+/-0.00119; mu= -6.9542+/- 0.072
mean_var=603.8565+/-124.939, 0's: 0 Z-trim(117.2): 97 B-trim: 503 in 1/55
Lambda= 0.052192
statistics sampled from 17803 (17896) to 17803 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.55), width: 16
Scan time: 7.180
The best scores are: opt bits E(32554)
CCDS42998.1 MN1 gene_id:4330|Hs108|chr22 (1320) 9395 723.4 9.9e-208
>>CCDS42998.1 MN1 gene_id:4330|Hs108|chr22 (1320 aa)
initn: 9395 init1: 9395 opt: 9395 Z-score: 3842.9 bits: 723.4 E(32554): 9.9e-208
Smith-Waterman score: 9395; 100.0% identity (100.0% similar) in 1320 aa overlap (1-1320:1-1320)
10 20 30 40 50 60
pF1KE0 MFGLDQFEPQVNSRNAGQGERNFNETGLSMNTHFKAPAFHTGGPPGPVDPAMSALGEPPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MFGLDQFEPQVNSRNAGQGERNFNETGLSMNTHFKAPAFHTGGPPGPVDPAMSALGEPPI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 LGMNMEPYGFHARGHSELHAGGLQAQPVHGFFGGQQPHHGHPGSHHPHQHHPHFGGNFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LGMNMEPYGFHARGHSELHAGGLQAQPVHGFFGGQQPHHGHPGSHHPHQHHPHFGGNFGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PDPGASCLHGGRLLGYGGAAGGLGSQPPFAEGYEHMAESQGPESFGPQRPGNLPDFHSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PDPGASCLHGGRLLGYGGAAGGLGSQPPFAEGYEHMAESQGPESFGPQRPGNLPDFHSSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 ASSHAVPAPCLPLDQSPNRAASFHGLPSSSGSDSHSLEPRRVTNQGAVDSLEYNYPGEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ASSHAVPAPCLPLDQSPNRAASFHGLPSSSGSDSHSLEPRRVTNQGAVDSLEYNYPGEAP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 SGHFDMFSPSDSEGQLPHYAAGRQVPGGAFPGASAMPRAAGMVGLSKMHAQPPQQQPQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGHFDMFSPSDSEGQLPHYAAGRQVPGGAFPGASAMPRAAGMVGLSKMHAQPPQQQPQQQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 QQPQQQQQQHGVFFERFSGARKMPVGLEPSVGSRHPLMQPPQQAPPPPQQQPPQQPPQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQPQQQQQQHGVFFERFSGARKMPVGLEPSVGSRHPLMQPPQQAPPPPQQQPPQQPPQQQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 PPPPPGLLVRQNSCPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRLENRSMH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PPPPPGLLVRQNSCPPALPRPQQGEAGTPSGGLQDGGPMLPSQHAQFEYPIHRLENRSMH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 PYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFPGSAGVDRCASWNGSMHNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFPGSAGVDRCASWNGSMHNG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 ALDNHLSPSAYPGLPGEFTPPVPDSFPSGPPLQHPAPDHQSLQQQQQQQQQQQQQQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALDNHLSPSAYPGLPGEFTPPVPDSFPSGPPLQHPAPDHQSLQQQQQQQQQQQQQQQQQQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 QQQQQQQQQQRQNAALMIKQMASRNQQQRLRQPNLAQLGHPGDVGQGGLVHGGPVGGLAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQQQQQQQQQRQNAALMIKQMASRNQQQRLRQPNLAQLGHPGDVGQGGLVHGGPVGGLAQ
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 PNFEREGGSTGAGRLGTFEQQAPHLAQESAWFSGPHPPPGDLLPRRMGGSGLPADCGPHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PNFEREGGSTGAGRLGTFEQQAPHLAQESAWFSGPHPPPGDLLPRRMGGSGLPADCGPHD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 PSLAPPPPPGGSGVLFRGPLQEPMRMPGEGHVPALPSPGLQFGGSLGGLGQLQSPGAGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PSLAPPPPPGGSGVLFRGPLQEPMRMPGEGHVPALPSPGLQFGGSLGGLGQLQSPGAGVG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 LPSAASERRPPPPDFATSALGGQPGFPFGAAGRQSTPHSGPGVNSPPSAGGGGGSSGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LPSAASERRPPPPDFATSALGGQPGFPFGAAGRQSTPHSGPGVNSPPSAGGGGGSSGGGG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 GGGAYPPQPDFQPSQRTSASKLGALSLGSFNKPSSKDNLFGQSCLAALSTACQNMIASLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GGGAYPPQPDFQPSQRTSASKLGALSLGSFNKPSSKDNLFGQSCLAALSTACQNMIASLG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 APNLNVTFNKKNPPEGKRKLSQNETDGAAVAGNPGSDYFPGGTAPGAPGPGGPSGTSSSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 APNLNVTFNKKNPPEGKRKLSQNETDGAAVAGNPGSDYFPGGTAPGAPGPGGPSGTSSSG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 SKASGPPNPPAQGDGTSLSPNYTLESTSGNDGKPVSGGGGRGRGRRKRDSGHVSPGTFFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SKASGPPNPPAQGDGTSLSPNYTLESTSGNDGKPVSGGGGRGRGRRKRDSGHVSPGTFFD
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 KYSAAPDSGGAPGVSPGQQQASGAAVGGSSAGETRGAPTPHEKALTSPSWGKGAELLLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 KYSAAPDSGGAPGVSPGQQQASGAAVGGSSAGETRGAPTPHEKALTSPSWGKGAELLLGD
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE0 QPDLIGSLDGGAKSDSSSPNVGEFASDEVSTSYANEDEVSSSSDNPQALVKASRSPLVTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QPDLIGSLDGGAKSDSSSPNVGEFASDEVSTSYANEDEVSSSSDNPQALVKASRSPLVTG
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE0 SPKLPPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGGPGHPGTPGLEQVRTPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SPKLPPRGVGAGEHGPKAPPPALGLGIMSNSTSTPDSYGGGGGPGHPGTPGLEQVRTPTS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE0 SSGAPPPDEIHPLEILQAQIQLQRQQFSISEDQPLGLKGGKKGECAVGASGAQNGDSELG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SSGAPPPDEIHPLEILQAQIQLQRQQFSISEDQPLGLKGGKKGECAVGASGAQNGDSELG
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE0 SCCSEAVKSAMSTIDLDSLMAEHSAAWYMPADKALVDSADDDKTLAPWEKAKPQNPNSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SCCSEAVKSAMSTIDLDSLMAEHSAAWYMPADKALVDSADDDKTLAPWEKAKPQNPNSKE
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE0 AHDLPANKASASQPGSHLQCLSVHCTDDVGDAKARASVPTWRSLHSDISNRFGTFVAALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 AHDLPANKASASQPGSHLQCLSVHCTDDVGDAKARASVPTWRSLHSDISNRFGTFVAALT
1270 1280 1290 1300 1310 1320
1320 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:17:54 2016 done: Fri Nov 4 04:17:55 2016
Total Scan time: 7.180 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]