Result of FASTA (omim) for
pF1KE0072
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0072, 1340 aa
1>>>pF1KE0072 1340 - 1340 aa - 1340 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2871+/-0.000509; mu= 2.8072+/- 0.031
mean_var=187.7096+/-40.464, 0's: 0 Z-trim(113.3): 413 B-trim: 217 in 1/56
Lambda= 0.093612
statistics sampled from 22118 (22558) to 22118 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.264), width: 16
Scan time: 16.500
The best scores are: opt bits E(85289)
NP_116755 (OMIM: 400022) protocadherin-11 Y-linked (1340) 8774 1199.1 0
XP_016885569 (OMIM: 400022) PREDICTED: protocadher (1329) 8651 1182.5 0
XP_016885568 (OMIM: 400022) PREDICTED: protocadher (1329) 8651 1182.5 0
XP_016885570 (OMIM: 400022) PREDICTED: protocadher (1329) 8651 1182.5 0
XP_016884908 (OMIM: 300246) PREDICTED: protocadher (1308) 8392 1147.5 0
NP_001161834 (OMIM: 300246) protocadherin-11 X-lin (1310) 8378 1145.6 0
XP_016884909 (OMIM: 300246) PREDICTED: protocadher (1339) 8378 1145.6 0
NP_116754 (OMIM: 400022) protocadherin-11 Y-linked (1048) 6751 925.8 0
NP_116751 (OMIM: 300246) protocadherin-11 X-linked (1337) 6659 913.4 0
XP_016884907 (OMIM: 300246) PREDICTED: protocadher (1366) 6659 913.4 0
NP_001161835 (OMIM: 300246) protocadherin-11 X-lin (1329) 6656 913.0 0
XP_011529215 (OMIM: 300246) PREDICTED: protocadher (1358) 6656 913.0 0
NP_001161832 (OMIM: 300246) protocadherin-11 X-lin (1339) 6654 912.8 0
XP_011529214 (OMIM: 300246) PREDICTED: protocadher (1368) 6654 912.8 0
XP_011529216 (OMIM: 300246) PREDICTED: protocadher (1347) 6646 911.7 0
NP_116750 (OMIM: 300246) protocadherin-11 X-linked (1347) 6646 911.7 0
XP_011529213 (OMIM: 300246) PREDICTED: protocadher (1376) 6646 911.7 0
XP_016884906 (OMIM: 300246) PREDICTED: protocadher (1376) 6646 911.7 0
XP_011529212 (OMIM: 300246) PREDICTED: protocadher (1376) 6646 911.7 0
XP_016884905 (OMIM: 300246) PREDICTED: protocadher (1345) 6637 910.5 0
XP_016885571 (OMIM: 400022) PREDICTED: protocadher (1037) 6628 909.2 0
NP_001265548 (OMIM: 400022) protocadherin-11 Y-lin (1037) 6628 909.2 0
NP_116753 (OMIM: 400022) protocadherin-11 Y-linked (1037) 6628 909.2 0
XP_016884911 (OMIM: 300246) PREDICTED: protocadher (1025) 6419 881.0 0
XP_011529218 (OMIM: 300246) PREDICTED: protocadher (1054) 6419 881.0 0
XP_011529217 (OMIM: 300246) PREDICTED: protocadher (1054) 6419 881.0 0
NP_001161833 (OMIM: 300246) protocadherin-11 X-lin (1065) 6416 880.6 0
XP_016884910 (OMIM: 300246) PREDICTED: protocadher (1076) 6416 880.6 0
XP_016885572 (OMIM: 400022) PREDICTED: protocadher ( 956) 6177 848.3 0
NP_065136 (OMIM: 603581) protocadherin-9 isoform 2 (1203) 4356 602.4 6.3e-171
NP_001305302 (OMIM: 603581) protocadherin-9 isofor (1161) 3964 549.4 5.3e-155
XP_016876108 (OMIM: 603581) PREDICTED: protocadher (1237) 3957 548.5 1.1e-154
NP_982354 (OMIM: 603581) protocadherin-9 isoform 1 (1237) 3957 548.5 1.1e-154
NP_001305301 (OMIM: 603581) protocadherin-9 isofor (1195) 3955 548.2 1.3e-154
XP_011533401 (OMIM: 603581) PREDICTED: protocadher (1054) 3952 547.8 1.5e-154
XP_016876109 (OMIM: 603581) PREDICTED: protocadher (1066) 3941 546.3 4.2e-154
XP_016876110 (OMIM: 603581) PREDICTED: protocadher (1019) 3936 545.6 6.5e-154
XP_005266465 (OMIM: 603581) PREDICTED: protocadher (1019) 3936 545.6 6.5e-154
NP_001305303 (OMIM: 603581) protocadherin-9 isofor (1032) 3935 545.5 7.2e-154
NP_073754 (OMIM: 614449) protocadherin-20 precurso ( 951) 2007 285.1 1.6e-75
XP_016876197 (OMIM: 614449) PREDICTED: protocadher ( 951) 2007 285.1 1.6e-75
XP_016863749 (OMIM: 602988) PREDICTED: protocadher (1286) 1493 215.7 1.7e-54
XP_016863750 (OMIM: 602988) PREDICTED: protocadher (1285) 1490 215.3 2.2e-54
XP_005248220 (OMIM: 602988) PREDICTED: protocadher (1275) 1485 214.7 3.5e-54
XP_016863751 (OMIM: 602988) PREDICTED: protocadher (1277) 1484 214.5 3.8e-54
XP_016863748 (OMIM: 602988) PREDICTED: protocadher (1288) 1484 214.5 3.9e-54
XP_011512145 (OMIM: 602988) PREDICTED: protocadher (1276) 1423 206.3 1.2e-51
XP_016863757 (OMIM: 602988) PREDICTED: protocadher (1182) 1400 203.2 9.4e-51
XP_005248221 (OMIM: 602988) PREDICTED: protocadher (1267) 1399 203.0 1.1e-50
XP_016863756 (OMIM: 602988) PREDICTED: protocadher (1190) 1398 202.9 1.1e-50
>>NP_116755 (OMIM: 400022) protocadherin-11 Y-linked iso (1340 aa)
initn: 8774 init1: 8774 opt: 8774 Z-score: 6413.6 bits: 1199.1 E(85289): 0
Smith-Waterman score: 8774; 100.0% identity (100.0% similar) in 1340 aa overlap (1-1340:1-1340)
10 20 30 40 50 60
pF1KE0 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE0 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE0 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE0 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE0 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE0 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
1270 1280 1290 1300 1310 1320
1330 1340
pF1KE0 PRQQARPSRGDSPIMETHPL
::::::::::::::::::::
NP_116 PRQQARPSRGDSPIMETHPL
1330 1340
>>XP_016885569 (OMIM: 400022) PREDICTED: protocadherin-1 (1329 aa)
initn: 8651 init1: 8651 opt: 8651 Z-score: 6323.8 bits: 1182.5 E(85289): 0
Smith-Waterman score: 8651; 100.0% identity (100.0% similar) in 1319 aa overlap (22-1340:11-1329)
10 20 30 40 50 60
pF1KE0 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
:::::::::::::::::::::::::::::::::::::::
XP_016 MTVGFNSDISSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
10 20 30 40
70 80 90 100 110 120
pF1KE0 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE0 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE0 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE0 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
470 480 490 500 510 520
550 560 570 580 590 600
pF1KE0 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
530 540 550 560 570 580
610 620 630 640 650 660
pF1KE0 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
590 600 610 620 630 640
670 680 690 700 710 720
pF1KE0 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
650 660 670 680 690 700
730 740 750 760 770 780
pF1KE0 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
710 720 730 740 750 760
790 800 810 820 830 840
pF1KE0 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
770 780 790 800 810 820
850 860 870 880 890 900
pF1KE0 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
830 840 850 860 870 880
910 920 930 940 950 960
pF1KE0 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
890 900 910 920 930 940
970 980 990 1000 1010 1020
pF1KE0 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
950 960 970 980 990 1000
1030 1040 1050 1060 1070 1080
pF1KE0 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
1010 1020 1030 1040 1050 1060
1090 1100 1110 1120 1130 1140
pF1KE0 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
1070 1080 1090 1100 1110 1120
1150 1160 1170 1180 1190 1200
pF1KE0 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
1130 1140 1150 1160 1170 1180
1210 1220 1230 1240 1250 1260
pF1KE0 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
1190 1200 1210 1220 1230 1240
1270 1280 1290 1300 1310 1320
pF1KE0 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
1250 1260 1270 1280 1290 1300
1330 1340
pF1KE0 PRQQARPSRGDSPIMETHPL
::::::::::::::::::::
XP_016 PRQQARPSRGDSPIMETHPL
1310 1320
>>XP_016885568 (OMIM: 400022) PREDICTED: protocadherin-1 (1329 aa)
initn: 8651 init1: 8651 opt: 8651 Z-score: 6323.8 bits: 1182.5 E(85289): 0
Smith-Waterman score: 8651; 100.0% identity (100.0% similar) in 1319 aa overlap (22-1340:11-1329)
10 20 30 40 50 60
pF1KE0 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
:::::::::::::::::::::::::::::::::::::::
XP_016 MTVGFNSDISSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
10 20 30 40
70 80 90 100 110 120
pF1KE0 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE0 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE0 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE0 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
470 480 490 500 510 520
550 560 570 580 590 600
pF1KE0 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
530 540 550 560 570 580
610 620 630 640 650 660
pF1KE0 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
590 600 610 620 630 640
670 680 690 700 710 720
pF1KE0 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
650 660 670 680 690 700
730 740 750 760 770 780
pF1KE0 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
710 720 730 740 750 760
790 800 810 820 830 840
pF1KE0 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
770 780 790 800 810 820
850 860 870 880 890 900
pF1KE0 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
830 840 850 860 870 880
910 920 930 940 950 960
pF1KE0 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
890 900 910 920 930 940
970 980 990 1000 1010 1020
pF1KE0 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
950 960 970 980 990 1000
1030 1040 1050 1060 1070 1080
pF1KE0 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
1010 1020 1030 1040 1050 1060
1090 1100 1110 1120 1130 1140
pF1KE0 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
1070 1080 1090 1100 1110 1120
1150 1160 1170 1180 1190 1200
pF1KE0 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
1130 1140 1150 1160 1170 1180
1210 1220 1230 1240 1250 1260
pF1KE0 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
1190 1200 1210 1220 1230 1240
1270 1280 1290 1300 1310 1320
pF1KE0 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
1250 1260 1270 1280 1290 1300
1330 1340
pF1KE0 PRQQARPSRGDSPIMETHPL
::::::::::::::::::::
XP_016 PRQQARPSRGDSPIMETHPL
1310 1320
>>XP_016885570 (OMIM: 400022) PREDICTED: protocadherin-1 (1329 aa)
initn: 8651 init1: 8651 opt: 8651 Z-score: 6323.8 bits: 1182.5 E(85289): 0
Smith-Waterman score: 8651; 100.0% identity (100.0% similar) in 1319 aa overlap (22-1340:11-1329)
10 20 30 40 50 60
pF1KE0 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
:::::::::::::::::::::::::::::::::::::::
XP_016 MTVGFNSDISSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
10 20 30 40
70 80 90 100 110 120
pF1KE0 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE0 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE0 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE0 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE0 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE0 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE0 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE0 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
470 480 490 500 510 520
550 560 570 580 590 600
pF1KE0 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
530 540 550 560 570 580
610 620 630 640 650 660
pF1KE0 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
590 600 610 620 630 640
670 680 690 700 710 720
pF1KE0 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
650 660 670 680 690 700
730 740 750 760 770 780
pF1KE0 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
710 720 730 740 750 760
790 800 810 820 830 840
pF1KE0 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
770 780 790 800 810 820
850 860 870 880 890 900
pF1KE0 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
830 840 850 860 870 880
910 920 930 940 950 960
pF1KE0 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
890 900 910 920 930 940
970 980 990 1000 1010 1020
pF1KE0 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
950 960 970 980 990 1000
1030 1040 1050 1060 1070 1080
pF1KE0 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
1010 1020 1030 1040 1050 1060
1090 1100 1110 1120 1130 1140
pF1KE0 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYG
1070 1080 1090 1100 1110 1120
1150 1160 1170 1180 1190 1200
pF1KE0 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSDACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIAL
1130 1140 1150 1160 1170 1180
1210 1220 1230 1240 1250 1260
pF1KE0 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIAL
1190 1200 1210 1220 1230 1240
1270 1280 1290 1300 1310 1320
pF1KE0 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFA
1250 1260 1270 1280 1290 1300
1330 1340
pF1KE0 PRQQARPSRGDSPIMETHPL
::::::::::::::::::::
XP_016 PRQQARPSRGDSPIMETHPL
1310 1320
>>XP_016884908 (OMIM: 300246) PREDICTED: protocadherin-1 (1308 aa)
initn: 8392 init1: 8392 opt: 8392 Z-score: 6134.9 bits: 1147.5 E(85289): 0
Smith-Waterman score: 8392; 98.2% identity (99.1% similar) in 1306 aa overlap (35-1340:3-1308)
10 20 30 40 50 60
pF1KE0 GFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIRE
::::::::::::.:::::::::::::::::
XP_016 MDLLSGTYIFAVLLACVVFHSGAQEKNYTIRE
10 20 30
70 80 90 100 110 120
pF1KE0 EIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
:.:::::::.:::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 EMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE0 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE0 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE0 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE0 NGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE0 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE
::::::::::::::::::::::::::::::::: :::: ::::::::.::::::::::::
XP_016 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPE
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE0 FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE0 NEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE0 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPG
::::::::::::::::::::::::::::::::::::::::::::: : ::::::::::::
XP_016 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPG
640 650 660 670 680 690
730 740 750 760 770 780
pF1KE0 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
700 710 720 730 740 750
790 800 810 820 830 840
pF1KE0 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVK
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
XP_016 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVK
760 770 780 790 800 810
850 860 870 880 890 900
pF1KE0 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKK
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENRQMIMMKKKKK
820 830 840 850 860 870
910 920 930 940 950 960
pF1KE0 KKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
880 890 900 910 920 930
970 980 990 1000 1010 1020
pF1KE0 PDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVS
::::::::::::::::::::::::: :::::::::::::::::::::.::::::::::::
XP_016 PDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVS
940 950 960 970 980 990
1030 1040 1050 1060 1070 1080
pF1KE0 DCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGY
1000 1010 1020 1030 1040 1050
1090 1100 1110 1120 1130 1140
pF1KE0 PQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYGHSDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKEITVQPTVEEASDNCTQECLIYGHSDA
1060 1070 1080 1090 1100 1110
1150 1160 1170 1180 1190 1200
pF1KE0 CWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIALCHSP
:::::::::::::::::::::::::::::::::::: :::::.:::::::::::::::::
XP_016 CWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCHSP
1120 1130 1140 1150 1160 1170
1210 1220 1230 1240 1250 1260
pF1KE0 PPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIALHRSQ
::::::::::::::::.::::::::::::::::::::::::::::::: :::::::::::
XP_016 PPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHRSQ
1180 1190 1200 1210 1220 1230
1270 1280 1290 1300 1310 1320
pF1KE0 AQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFAPRQQ
:::::::::::::::.:::::::::::::::::::::::::::::::::::::::.::::
XP_016 AQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPRQQ
1240 1250 1260 1270 1280 1290
1330 1340
pF1KE0 ARPSRGDSPIMETHPL
:::::::::::: :::
XP_016 ARPSRGDSPIMEEHPL
1300
>>NP_001161834 (OMIM: 300246) protocadherin-11 X-linked (1310 aa)
initn: 8040 init1: 6914 opt: 8378 Z-score: 6124.7 bits: 1145.6 E(85289): 0
Smith-Waterman score: 8378; 98.0% identity (98.9% similar) in 1308 aa overlap (35-1340:3-1310)
10 20 30 40 50 60
pF1KE0 GFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIRE
::::::::::::.:::::::::::::::::
NP_001 MDLLSGTYIFAVLLACVVFHSGAQEKNYTIRE
10 20 30
70 80 90 100 110 120
pF1KE0 EIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
:.:::::::.:::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 EMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE0 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE0 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE0 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE0 NGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_001 NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE0 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE
::::::::::::::::::::::::::::::::: :::: ::::::::.::::::::::::
NP_001 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPE
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE0 FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE0 NEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE0 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPG
::::::::::::::::::::::::::::::::::::::::::::: : ::::::::::::
NP_001 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPG
640 650 660 670 680 690
730 740 750 760 770 780
pF1KE0 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
700 710 720 730 740 750
790 800 810 820 830 840
pF1KE0 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVK
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
NP_001 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVK
760 770 780 790 800 810
850 860 870 880 890 900
pF1KE0 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKK
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENRQMIMMKKKKK
820 830 840 850 860 870
910 920 930 940 950 960
pF1KE0 KKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
880 890 900 910 920 930
970 980 990 1000 1010 1020
pF1KE0 PDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVS
::::::::::::::::::::::::: :::::::::::::::::::::.::::::::::::
NP_001 PDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVS
940 950 960 970 980 990
1030 1040 1050 1060 1070 1080
pF1KE0 DCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGY
1000 1010 1020 1030 1040 1050
1090 1100 1110 1120 1130 1140
pF1KE0 PQEEYFDRATPSNRTEGDGNSDPESTFIPGLKK--EITVQPTVEEASDNCTQECLIYGHS
::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
NP_001 PQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDNCTQECLIYGHS
1060 1070 1080 1090 1100 1110
1150 1160 1170 1180 1190 1200
pF1KE0 DACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIALCH
:::::::::::::::::::::::::::::::::::::: :::::.:::::::::::::::
NP_001 DACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCH
1120 1130 1140 1150 1160 1170
1210 1220 1230 1240 1250 1260
pF1KE0 SPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIALHR
::::::::::::::::::.::::::::::::::::::::::::::::::: :::::::::
NP_001 SPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHR
1180 1190 1200 1210 1220 1230
1270 1280 1290 1300 1310 1320
pF1KE0 SQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFAPR
:::::::::::::::::.:::::::::::::::::::::::::::::::::::::::.::
NP_001 SQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPR
1240 1250 1260 1270 1280 1290
1330 1340
pF1KE0 QQARPSRGDSPIMETHPL
:::::::::::::: :::
NP_001 QQARPSRGDSPIMEEHPL
1300 1310
>>XP_016884909 (OMIM: 300246) PREDICTED: protocadherin-1 (1339 aa)
initn: 8040 init1: 6914 opt: 8378 Z-score: 6124.5 bits: 1145.6 E(85289): 0
Smith-Waterman score: 8378; 98.0% identity (98.9% similar) in 1308 aa overlap (35-1340:32-1339)
10 20 30 40 50 60
pF1KE0 GFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIRE
::::::::::::.:::::::::::::::::
XP_016 RTERQWVLIQIFQVLCGLIQQTVTSVPGMDLLSGTYIFAVLLACVVFHSGAQEKNYTIRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
:.:::::::.:::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 EMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 NGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE
::::::::::::::::::::::::::::::::: :::: ::::::::.::::::::::::
XP_016 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 NEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPG
::::::::::::::::::::::::::::::::::::::::::::: : ::::::::::::
XP_016 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVK
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
XP_016 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKK
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENRQMIMMKKKKK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 KKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 PDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVS
::::::::::::::::::::::::: :::::::::::::::::::::.::::::::::::
XP_016 PDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE0 DCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGLPLGY
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KE0 PQEEYFDRATPSNRTEGDGNSDPESTFIPGLKK--EITVQPTVEEASDNCTQECLIYGHS
::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
XP_016 PQEEYFDRATPSNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDNCTQECLIYGHS
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KE0 DACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPPVTQTIVLCHSPPVTQTIALCH
:::::::::::::::::::::::::::::::::::::: :::::.:::::::::::::::
XP_016 DACWMPASLDHSSSSQAQASALCHSPPLSQASTQHHSPRVTQTIALCHSPPVTQTIALCH
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KE0 SPPPIQVSALHHSPPLVQGTALHHSPPSAQASALCYSPPLAQAAAISHSSSLPQVIALHR
::::::::::::::::::.::::::::::::::::::::::::::::::: :::::::::
XP_016 SPPPIQVSALHHSPPLVQATALHHSPPSAQASALCYSPPLAQAAAISHSSPLPQVIALHR
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KE0 SQAQSSVSLQQGWVQGANGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFAPR
:::::::::::::::::.:::::::::::::::::::::::::::::::::::::::.::
XP_016 SQAQSSVSLQQGWVQGADGLCSVDQGVQGSATSQFYTMSERLHPSDDSIKVIPLTTFTPR
1270 1280 1290 1300 1310 1320
1330 1340
pF1KE0 QQARPSRGDSPIMETHPL
:::::::::::::: :::
XP_016 QQARPSRGDSPIMEEHPL
1330
>>NP_116754 (OMIM: 400022) protocadherin-11 Y-linked iso (1048 aa)
initn: 7308 init1: 6751 opt: 6751 Z-score: 4938.7 bits: 925.8 E(85289): 0
Smith-Waterman score: 6751; 99.7% identity (99.9% similar) in 1047 aa overlap (1-1047:1-1047)
10 20 30 40 50 60
pF1KE0 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 MFRVGFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TIREEIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ARIDREKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 PENSAINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 REEKDTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TQLHATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ASDGGLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DADHNGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 SAMLFIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 APPEFSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 VFTHNEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ISFDREKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TNPGTVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 VLVKANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DYVKILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KKKKKKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTF
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KPDSPDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDP
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KE0 YSVSDCGYPVTTFEVPVSVHTRPSQRRVTFHLPEGSQESSSDGGLGDHDAGSLTSTSHGL
:::::::::::::::::::::::.. :
NP_116 YSVSDCGYPVTTFEVPVSVHTRPTDSRT
1030 1040
>>NP_116751 (OMIM: 300246) protocadherin-11 X-linked iso (1337 aa)
initn: 7881 init1: 6416 opt: 6659 Z-score: 4869.9 bits: 913.4 E(85289): 0
Smith-Waterman score: 8314; 96.0% identity (96.9% similar) in 1335 aa overlap (35-1340:3-1337)
10 20 30 40 50 60
pF1KE0 GFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIRE
::::::::::::.:::::::::::::::::
NP_116 MDLLSGTYIFAVLLACVVFHSGAQEKNYTIRE
10 20 30
70 80 90 100 110 120
pF1KE0 EIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
:.:::::::.:::::::::::::::::.::::::::::::::::::::::::::::::::
NP_116 EMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
40 50 60 70 80 90
130 140 150 160 170 180
pF1KE0 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KE0 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
160 170 180 190 200 210
250 260 270 280 290 300
pF1KE0 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE0 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KE0 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
340 350 360 370 380 390
430 440 450 460 470 480
pF1KE0 NGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
NP_116 NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
400 410 420 430 440 450
490 500 510 520 530 540
pF1KE0 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE
::::::::::::::::::::::::::::::::: :::: ::::::::.::::::::::::
NP_116 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPE
460 470 480 490 500 510
550 560 570 580 590 600
pF1KE0 FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 FSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
520 530 540 550 560 570
610 620 630 640 650 660
pF1KE0 NEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
580 590 600 610 620 630
670 680 690 700 710 720
pF1KE0 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPG
::::::::::::::::::::::::::::::::::::::::::::: : ::::::::::::
NP_116 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPG
640 650 660 670 680 690
730 740 750 760 770 780
pF1KE0 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
700 710 720 730 740 750
790 800 810 820 830 840
pF1KE0 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVK
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
NP_116 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVK
760 770 780 790 800 810
850 860 870 880 890 900
pF1KE0 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKK
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_116 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENRQMIMMKKKKK
820 830 840 850 860 870
910 920 930 940 950 960
pF1KE0 KKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
NP_116 KKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
880 890 900 910 920 930
970 980 990 1000 1010 1020
pF1KE0 PDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVS
::::::::::::::::::::::::: :::::::::::::::::::::.::::::::::::
NP_116 PDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVS
940 950 960 970 980 990
1030 1040 1050
pF1KE0 DCGYPVTTFEVPVSVHTRP---------------------------SQRRVTFHLPEGSQ
::::::::::::::::::: ::::::::::::::
NP_116 DCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTMEIWIHPQPQSQRRVTFHLPEGSQ
1000 1010 1020 1030 1040 1050
1060 1070 1080 1090 1100 1110
pF1KE0 ESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 ESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKK
1060 1070 1080 1090 1100 1110
1120 1130 1140 1150 1160 1170
pF1KE0 --EITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_116 AAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQAST
1120 1130 1140 1150 1160 1170
1180 1190 1200 1210 1220 1230
pF1KE0 QHHSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASA
::::: :::::.:::::::::::::::::::::::::::::::::.::::::::::::::
NP_116 QHHSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASA
1180 1190 1200 1210 1220 1230
1240 1250 1260 1270 1280 1290
pF1KE0 LCYSPPLAQAAAISHSSSLPQVIALHRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATS
::::::::::::::::: ::::::::::::::::::::::::::.:::::::::::::::
NP_116 LCYSPPLAQAAAISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATS
1240 1250 1260 1270 1280 1290
1300 1310 1320 1330 1340
pF1KE0 QFYTMSERLHPSDDSIKVIPLTTFAPRQQARPSRGDSPIMETHPL
::::::::::::::::::::::::.:::::::::::::::: :::
NP_116 QFYTMSERLHPSDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL
1300 1310 1320 1330
>>XP_016884907 (OMIM: 300246) PREDICTED: protocadherin-1 (1366 aa)
initn: 7881 init1: 6416 opt: 6659 Z-score: 4869.7 bits: 913.4 E(85289): 0
Smith-Waterman score: 8314; 96.0% identity (96.9% similar) in 1335 aa overlap (35-1340:32-1366)
10 20 30 40 50 60
pF1KE0 GFLIISSSSSLSPLLLVSVVRVNTTNCHKCLLSGTYIFAVLLVCVVFHSGAQEKNYTIRE
::::::::::::.:::::::::::::::::
XP_016 RTERQWVLIQIFQVLCGLIQQTVTSVPGMDLLSGTYIFAVLLACVVFHSGAQEKNYTIRE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 EIPENVLIGNLLKDLNLSLIPNKSLTTTMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
:.:::::::.:::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 EMPENVLIGDLLKDLNLSLIPNKSLTTAMQFKLVYKTGDVPLIRIEEDTGEIFTTGARID
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 REKLCAGIPRDEHCFYEVEVAILPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AINSKYTLPAAVDPDVGINGVQNYELIKSQNIFGLDVIETPEGDKMPQLIVQKELDREEK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTYVMKVKVEDGGFPQRSSTAILQVSVTDTNDNHPVFKETEIEVSIPENAPVGTSVTQLH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATDADIGENAKIHFSFSNLVSNIARRLFHLNATTGLITIKEPLDREETPNHKLLVLASDG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE0 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLMPARAMVLVNVTDVNDNVPSIDIRYIVNPVNDTVVLSENIPLNTKIALITVTDKDADH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE0 NGRVTCFTDHEIPFRLRPVFSNQFLLENAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
XP_016 NGRVTCFTDHEIPFRLRPVFSNQFLLETAAYLDYESTKEYAIKLLAADAGKPPLNQSAML
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE0 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLMKVSATDADSGPNAEINYLLGPDAPPE
::::::::::::::::::::::::::::::::: :::: ::::::::.::::::::::::
XP_016 FIKVKDENDNAPVFTQSFVTVSIPENNSPGIQLTKVSAMDADSGPNAKINYLLGPDAPPE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE0 FSLDRRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FSLDCRTGMLTVVKKLDREKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE0 NEYKFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NEYNFYVPENLPRHGTVGLITVTDPDYGDNSAVTLSILDENDDFTIDSQTGVIRPNISFD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE0 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPYNYSYELVLPSTNPG
::::::::::::::::::::::::::::::::::::::::::::: : ::::::::::::
XP_016 REKQESYTFYVKAEDGGRVSRSSSAKVTINVVDVNDNKPVFIVPPSNCSYELVLPSTNPG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE0 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVVFQVIAVDNDTGMNAEVRYSIVGGNTRDLFAIDQETGNITLMEKCDVTDLGLHRVLVK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE0 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSIEAPVTPNTEIADVSSPTSDYVK
::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
XP_016 ANDLGQPDSLFSVVIVNLFVNESVTNATLINELVRKSTEAPVTPNTEIADVSSPTSDYVK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE0 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNMQNSEWATPNPENRQMIMMKKKKK
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 ILVAAVAGTITVVVVIFITAVVRCRQAPHLKAAQKNKQNSEWATPNPENRQMIMMKKKKK
850 860 870 880 890 900
910 920 930 940 950 960
pF1KE0 KKKHSPKNLLLNVVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKKHSPKNLLLNFVTIEETKADDVDSDGNRVTLDLPIDLEEQTMGKYNWVTTPTTFKPDS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KE0 PDLARHYKSASPQPAFQIQPETPLNLKHHIIQELPLDNTFVACDSISNCSSSSSDPYSVS
::::::::::::::::::::::::: :::::::::::::::::::::.::::::::::::
XP_016 PDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVACDSISKCSSSSSDPYSVS
970 980 990 1000 1010 1020
1030 1040 1050
pF1KE0 DCGYPVTTFEVPVSVHTRP---------------------------SQRRVTFHLPEGSQ
::::::::::::::::::: ::::::::::::::
XP_016 DCGYPVTTFEVPVSVHTRPPMKEVVRSCTPMKESTTMEIWIHPQPQSQRRVTFHLPEGSQ
1030 1040 1050 1060 1070 1080
1060 1070 1080 1090 1100 1110
pF1KE0 ESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESSSDGGLGDHDAGSLTSTSHGLPLGYPQEEYFDRATPSNRTEGDGNSDPESTFIPGLKK
1090 1100 1110 1120 1130 1140
1120 1130 1140 1150 1160 1170
pF1KE0 --EITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAEITVQPTVEEASDNCTQECLIYGHSDACWMPASLDHSSSSQAQASALCHSPPLSQAST
1150 1160 1170 1180 1190 1200
1180 1190 1200 1210 1220 1230
pF1KE0 QHHSPPVTQTIVLCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQGTALHHSPPSAQASA
::::: :::::.:::::::::::::::::::::::::::::::::.::::::::::::::
XP_016 QHHSPRVTQTIALCHSPPVTQTIALCHSPPPIQVSALHHSPPLVQATALHHSPPSAQASA
1210 1220 1230 1240 1250 1260
1240 1250 1260 1270 1280 1290
pF1KE0 LCYSPPLAQAAAISHSSSLPQVIALHRSQAQSSVSLQQGWVQGANGLCSVDQGVQGSATS
::::::::::::::::: ::::::::::::::::::::::::::.:::::::::::::::
XP_016 LCYSPPLAQAAAISHSSPLPQVIALHRSQAQSSVSLQQGWVQGADGLCSVDQGVQGSATS
1270 1280 1290 1300 1310 1320
1300 1310 1320 1330 1340
pF1KE0 QFYTMSERLHPSDDSIKVIPLTTFAPRQQARPSRGDSPIMETHPL
::::::::::::::::::::::::.:::::::::::::::: :::
XP_016 QFYTMSERLHPSDDSIKVIPLTTFTPRQQARPSRGDSPIMEEHPL
1330 1340 1350 1360
1340 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:17:00 2016 done: Fri Nov 4 04:17:02 2016
Total Scan time: 16.500 Total Display time: 0.840
Function used was FASTA [36.3.4 Apr, 2011]