FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0062, 634 aa
  1>>>pF1KE0062 634 - 634 aa - 634 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7978+/-0.00127; mu= 10.9577+/- 0.075
 mean_var=94.0186+/-19.098, 0's: 0 Z-trim(102.3): 83  B-trim: 0 in 0/49
 Lambda= 0.132272
 statistics sampled from 6801 (6872) to 6801 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.211), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS3201.1 WDR49 gene_id:151790|Hs108|chr3         ( 697)  392 86.1 1.8e-16


>>CCDS3201.1 WDR49 gene_id:151790|Hs108|chr3              (697 aa)
 initn: 289 init1: 139 opt: 392  Z-score: 409.2  bits: 86.1 E(32554): 1.8e-16
Smith-Waterman score: 404; 24.7% identity (55.0% similar) in 462 aa overlap (35-455:11-453)

           10        20        30        40        50        60    
pF1KE0 YISALNCFGSCSLDSNHSLVLESLKRLEDNLPVREFSMPRGANTFCYCVKANVIVTGGDD
                                     : .  :.. .: ..: :  . :.:.:.: .
CCDS32                     MAWREKSKKRLNMTSFNIAQGIHAFDYHSRLNLIATAGIN
                                   10        20        30        40

           70        80        90       100       110        120   
pF1KE0 KVIRLWHPNISTKPVGKLVGHMFSIAEIVTNEKDQHVVSLSSAKVFRVWDIQ-TLSLLQV
       . . ::.: . .:::: : ::  :.  .    . ... :.:. ::.:.::::  ::. ..
CCDS32 NKVCLWNPYVVSKPVGVLWGHSASVIAVQFFVERKQLFSFSKDKVLRLWDIQHQLSIQRI
               50        60        70        80        90       100

           130       140        150       160       170       180  
pF1KE0 FHDSQGGPGDMQIYSMI-YDANHGMLITGSSVMDMYPLTRMIQDTKQVPHTHEREINVML
          . . : ....  .. .:  :: :.   :  ..  :  : .....  ..::. .. .:
CCDS32 ---ACSFPKSQDFRCLFHFDEAHGRLFI--SFNNQLALLAMKSEASKRVKSHEKAVTCVL
                 110       120         130       140       150     

            190       200       210       220       230       240  
pF1KE0 YNKYFHQVLTICSESIIRVWELETGLQVYQILEPHGFNTEVTSAAVDESGFLFATGAYNG
       ::. ..::..  . : .  : ..:: .. :.   :: :.:... :.: .   . ::. .:
CCDS32 YNSILKQVISSDTGSTVSFWMIDTGQKIKQFTGCHG-NAEISTMALDANETRLLTGSTDG
         160       170       180       190        200       210    

            250       260       270                    280         
pF1KE0 TVRIWDFGSGQEMKVLPEGKDWKEDEHCL-------------RRLIFLKAQEKHQQLVLA
       ::.:::: .:   ..:  :.:   :   .             : .  .. :. .: ..  
CCDS32 TVKIWDF-NGYCHHTLNVGQDGAVDISQILILKKKILVTGWERAITVFRPQNFNQFFIQP
          220        230       240       250       260       270   

     290       300       310       320       330       340         
pF1KE0 LERNGTIKMIQGKEDDIYLMVIWELPDVVPFLQDGKHAVHLRMSTRDRNMAIPFPDVELI
        : .: :.    ..:::   ..     .:    ::.  . :  .. .    .  :: . .
CCDS32 EEWKGGIQ----HHDDILCAAFLPPQTLVTGSYDGE--IVLWNNSTENAHHVLHPDYQRL
           280           290       300         310       320       

     350                   360       370        380                
pF1KE0 VERNF------------SQPTDNPTMDLLRVNCIDL-LQVEGYNLIA--------AGTLN
       .. ..            :::. .:  :   ..  .. ...:: : .          .:  
CCDS32 LKSKLDTKPQKLLSAGRSQPS-HPMADHSTTGVRNFEIDTEGKNAVMRLCFLKARKNTAV
       330       340        350       360       370       380      

      390         400       410        420       430         440   
pF1KE0 EG--HVILCNISSFLDPPHDEKKFKQLLS-WRAHSLEIIQVIYVEEK--QVVLTASIDGS
        :  ... :. :...      ::  :::. . :::  . ..:.  .:  . . :...:: 
CCDS32 TGGANLVSCGGSGYVRFWDIYKK--QLLAEFLAHS-GVGSIIMSTDKMNRYLTTGDLDGW
        390       400         410        420       430       440   

           450       460       470       480       490       500   
pF1KE0 VRLWHALNGHYCGYFGQRRLFELSQTRDFILPCDVTEYPIEIKEESKFTEKQKYEYPLIF
       ...:.  .  ::                                                
CCDS32 LKIWNIEE--YCLNSSKNKITKAPTLIRSFQPHEDRISSLEMCEPGGQLLIISSSADCSI
           450         460       470       480       490       500 




634 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:38:44 2016 done: Sat Nov  5 21:38:45 2016
 Total Scan time:  3.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]