FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0052, 1087 aa
  1>>>pF1KE0052 1087 - 1087 aa - 1087 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7477+/-0.000967; mu= 15.5541+/- 0.059
 mean_var=99.4652+/-19.192, 0's: 0 Z-trim(107.3): 13  B-trim: 0 in 0/53
 Lambda= 0.128599
 statistics sampled from 9510 (9511) to 9510 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.292), width:  16
 Scan time:  4.120

The best scores are:                                      opt bits E(32554)
CCDS8976.1 HELB gene_id:92797|Hs108|chr12          (1087) 7302 1365.9       0


>>CCDS8976.1 HELB gene_id:92797|Hs108|chr12               (1087 aa)
 initn: 7302 init1: 7302 opt: 7302  Z-score: 7318.3  bits: 1365.9 E(32554):    0
Smith-Waterman score: 7302; 100.0% identity (100.0% similar) in 1087 aa overlap (1-1087:1-1087)

               10        20        30        40        50        60
pF1KE0 MARSSPYLRQLQGPLLPPRDLVEEDDDYLNDDVEEDEESVFIDAEELCSGGVKAGSLPGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MARSSPYLRQLQGPLLPPRDLVEEDDDYLNDDVEEDEESVFIDAEELCSGGVKAGSLPGC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LRVSICDENTQETCKVFGRFPITGAWWRVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LRVSICDENTQETCKVFGRFPITGAWWRVKVQVKPVVGSRSYQYQVQGFPSYFLQSDMSP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 PNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNFENLRETLRTFHKETGRKDQKQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PNQKHICALFLKECEVSSDDVNKFLTWVKEVSNYKNLNFENLRETLRTFHKETGRKDQKQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 PTQNGQEELFLDNEMSLPLENTIPFRNVMTALQFPKIMEFLPVLLPRHFKWIIGSGSKEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PTQNGQEELFLDNEMSLPLENTIPFRNVMTALQFPKIMEFLPVLLPRHFKWIIGSGSKEM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 LKEIEEILGTHPWKLGFSKITYREWKLLRCEASWIAFCQCESLLQLMTDLEKNALIMYSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LKEIEEILGTHPWKLGFSKITYREWKLLRCEASWIAFCQCESLLQLMTDLEKNALIMYSR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 LKQICREDGHTYVEVNDLTLTLSNHMSFHAASESLKFLKDIGVVTYEKSCVFPYDLYHAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LKQICREDGHTYVEVNDLTLTLSNHMSFHAASESLKFLKDIGVVTYEKSCVFPYDLYHAE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 RAIAFSICDLMKKPPWHLCVDVEKVLASIHTTKPENSSDDALNESKPDEVRLENPVDVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 RAIAFSICDLMKKPPWHLCVDVEKVLASIHTTKPENSSDDALNESKPDEVRLENPVDVVD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 TQDNGDHIWTNGENEINAEISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TQDNGDHIWTNGENEINAEISEVQLDQDQVEVPLDRDQVAALEMICSNPVTVISGKGGCG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 KTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KTTIVSRLFKHIEQLEEREVKKACEDFEQDQNASEEWITFTEQSQLEADKAIEVLLTAPT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 GKAAGLLRQKTGLHAYTLCQVNYSFYSWTQTMMTTNKPWKFSSVRVLVVDEGSLVSVGIF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GKAAGLLRQKTGLHAYTLCQVNYSFYSWTQTMMTTNKPWKFSSVRVLVVDEGSLVSVGIF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 KSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLKSRNCAIELKTNHRAESQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KSVLNLLCEHSKLSKLIILGDIRQLPSIEPGNLLKDLFETLKSRNCAIELKTNHRAESQL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 IVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRLPEEDASSQSSKTNHHSCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 IVDNATRISRRQFPKFDAELNISDNPTLPISIQDKTFIFVRLPEEDASSQSSKTNHHSCL
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 YSAVKTLLQENNLQNAKTSQFIAFRRQDCDLINDCCCKHYTGHLTKDHQSRLVFGIGDKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 YSAVKTLLQENNLQNAKTSQFIAFRRQDCDLINDCCCKHYTGHLTKDHQSRLVFGIGDKI
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 CCTRNAYLSDLLPENISGSQQNNDLDASSEDFSGTLPDFAKNKRDFESNVRLCNGEIFFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 CCTRNAYLSDLLPENISGSQQNNDLDASSEDFSGTLPDFAKNKRDFESNVRLCNGEIFFI
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 TNDVTDVTFGKRRSLTINNMAGLEVTVDFKKLMKYCRIKHAWARTIHTFQGSEEQTVVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 TNDVTDVTFGKRRSLTINNMAGLEVTVDFKKLMKYCRIKHAWARTIHTFQGSEEQTVVYV
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE0 VGKAGRQHWQHVYTAVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 VGKAGRQHWQHVYTAVTRGRCRVYVIAEESQLRNAIMKNSFPRKTRLKHFLQSKLSSSGA
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE0 PPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PPADFPSPRKSSGDSGGPSTPSASPLPVVTDHAMTNDVTWSEASSPDERTLTFAERWQLS
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE0 SPDGVDTDDDLPKSRASKRTCGVNDDESPSKIFMVGESPQVSSRLQNLRLNNLIPRQLFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SPDGVDTDDDLPKSRASKRTCGVNDDESPSKIFMVGESPQVSSRLQNLRLNNLIPRQLFK
             1030      1040      1050      1060      1070      1080

              
pF1KE0 PTDNQET
       :::::::
CCDS89 PTDNQET
              




1087 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:56:01 2016 done: Fri Nov  4 05:56:02 2016
 Total Scan time:  4.120 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]