FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0041, 520 aa
  1>>>pF1KE0041 520 - 520 aa - 520 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3884+/-0.00105; mu= 12.3533+/- 0.063
 mean_var=77.4691+/-15.046, 0's: 0 Z-trim(103.8): 40  B-trim: 5 in 1/48
 Lambda= 0.145717
 statistics sampled from 7579 (7607) to 7579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.234), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS34539.1 SAMD3 gene_id:154075|Hs108|chr6        ( 520) 3483 742.2 3.3e-214
CCDS64525.1 SAMD3 gene_id:154075|Hs108|chr6        ( 544) 3483 742.2 3.5e-214


>>CCDS34539.1 SAMD3 gene_id:154075|Hs108|chr6             (520 aa)
 initn: 3483 init1: 3483 opt: 3483  Z-score: 3959.1  bits: 742.2 E(32554): 3.3e-214
Smith-Waterman score: 3483; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)

               10        20        30        40        50        60
pF1KE0 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALLALNDRMVQQLVKKIGHQAVLMDLI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEESSSPARHGEQMPSFYPAENLDNGLI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDVKCMLAEQKCPDHSMRIRIIEFLQA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGFFLWKRALKDRFKYVRRPIEDDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGCGFFLWKRALKDRFKYVRRPIEDDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 QVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQEYVKTEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEEAVCFDSELDEHIKWFQQEYVKTEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 DWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFLKCPYQMFREFQLLTRTDIYKKTRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFLKCPYQMFREFQLLTRTDIYKKTRH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 ILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDMLKYMKMTATCLLLPDVFGDDPSLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDMLKYMKMTATCLLLPDVFGDDPSLF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 VIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERLTKVDDCVTALAALVAAFHVFRIEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERLTKVDDCVTALAALVAAFHVFRIEC
              430       440       450       460       470       480

              490       500       510       520
pF1KE0 PRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQHPLT
       ::::::::::::::::::::::::::::::::::::::::
CCDS34 PRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQHPLT
              490       500       510       520

>>CCDS64525.1 SAMD3 gene_id:154075|Hs108|chr6             (544 aa)
 initn: 3483 init1: 3483 opt: 3483  Z-score: 3958.8  bits: 742.2 E(32554): 3.5e-214
Smith-Waterman score: 3483; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:25-544)

                                       10        20        30      
pF1KE0                         METWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALL
                               ::::::::::::::::::::::::::::::::::::
CCDS64 MRSSKLQSPSPSQEKQGVYLQETAMETWSVEQVCSWLVEKNLGELVHRFQEEEVSGAALL
               10        20        30        40        50        60

         40        50        60        70        80        90      
pF1KE0 ALNDRMVQQLVKKIGHQAVLMDLIKKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 ALNDRMVQQLVKKIGHQAVLMDLIKKYKQNTQGLKSPENPKKAALVMQTEAARDYRDEES
               70        80        90       100       110       120

        100       110       120       130       140       150      
pF1KE0 SSPARHGEQMPSFYPAENLDNGLIDQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSPARHGEQMPSFYPAENLDNGLIDQRVLKQRRNVKQILARSKALQWTKSYVLPEFPYDV
              130       140       150       160       170       180

        160       170       180       190       200       210      
pF1KE0 KCMLAEQKCPDHSMRIRIIEFLQADMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KCMLAEQKCPDHSMRIRIIEFLQADMTKYLEGSLYPSTQQYNDVVNALLQAHPFLDEDGC
              190       200       210       220       230       240

        220       230       240       250       260       270      
pF1KE0 GFFLWKRALKDRFKYVRRPIEDDEQVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GFFLWKRALKDRFKYVRRPIEDDEQVIRNKCKFGHRRGQTRKSLADIRFDEIKLVQIKEE
              250       260       270       280       290       300

        280       290       300       310       320       330      
pF1KE0 AVCFDSELDEHIKWFQQEYVKTEKDWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 AVCFDSELDEHIKWFQQEYVKTEKDWREIDKRMSQTLEIRRKMIGSRTPLKDILKLFPFL
              310       320       330       340       350       360

        340       350       360       370       380       390      
pF1KE0 KCPYQMFREFQLLTRTDIYKKTRHILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KCPYQMFREFQLLTRTDIYKKTRHILESYSENILTSFSVVDNPINIVLQEKMKHYTDEDM
              370       380       390       400       410       420

        400       410       420       430       440       450      
pF1KE0 LKYMKMTATCLLLPDVFGDDPSLFVIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LKYMKMTATCLLLPDVFGDDPSLFVIMNEQVQVSTPVLEVKNPFNMEVCEFSLYLERERL
              430       440       450       460       470       480

        460       470       480       490       500       510      
pF1KE0 TKVDDCVTALAALVAAFHVFRIECPRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TKVDDCVTALAALVAAFHVFRIECPRRLSQTFNFLETLIFDMHSPYFPSLKEKENEVGFQ
              490       500       510       520       530       540

        520
pF1KE0 HPLT
       ::::
CCDS64 HPLT
           




520 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:28:16 2016 done: Fri Nov  4 06:28:17 2016
 Total Scan time:  3.130 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]