FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0034, 496 aa
  1>>>pF1KE0034 496 - 496 aa - 496 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7338+/-0.000913; mu= 15.9225+/- 0.055
 mean_var=70.2581+/-14.211, 0's: 0 Z-trim(105.3): 16  B-trim: 0 in 0/52
 Lambda= 0.153012
 statistics sampled from 8374 (8377) to 8374 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.257), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS2712.1 TCAIM gene_id:285343|Hs108|chr3         ( 496) 3349 748.6 3.5e-216
CCDS43076.1 TCAIM gene_id:285343|Hs108|chr3        (  70)  414 100.4 6.9e-22


>>CCDS2712.1 TCAIM gene_id:285343|Hs108|chr3              (496 aa)
 initn: 3349 init1: 3349 opt: 3349  Z-score: 3994.6  bits: 748.6 E(32554): 3.5e-216
Smith-Waterman score: 3349; 99.8% identity (100.0% similar) in 496 aa overlap (1-496:1-496)

               10        20        30        40        50        60
pF1KE0 MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVEREINEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVEREINEN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLKRLSVYLENLQKPGFKSLKPTQLTFYVRETDQSSSDGQEPFSTSGFRAVKFTLHTRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SLKRLSVYLENLQKPGFKSLKPTQLTFYVRETDQSSSDGQEPFSTSGFRAVKFTLHTRDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 LSTVLYILNSCSLSVEHIQSLNTNMHTQPLKEAKRMPDRPIKWDKSYYSFTGFKDPDEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LSTVLYILNSCSLSVEHIQSLNTNMHTQPLKEAKRMPDRPIKWDKSYYSFTGFKDPDEDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 EQVSRVETTLTSWLDNNGKSAVKKLKNSLPLRKELDRLKDELSHQLQLSDIRWQRSWGIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 EQVSRVETTLTSWLDNNGKSAVKKLKNSLPLRKELDRLKDELSHQLQLSDIRWQRSWGIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 HRCGQLHSLSRLAQQNLETLKKAKGCTIIFTDRSGMSAVGHVMLGTMDVHHHWTKLFERL
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 HRCSQLHSLSRLAQQNLETLKKAKGCTIIFTDRSGMSAVGHVMLGTMDVHHHWTKLFERL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 PSYFDLQRRLMILEDQISYLLGGIQVVYIEELQPVLTLEEYYSLLDVFYNRLLKSRILFH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PSYFDLQRRLMILEDQISYLLGGIQVVYIEELQPVLTLEEYYSLLDVFYNRLLKSRILFH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PRSLRGLQMILNSDRYAPSLHELGHFNIPTLCDPANLQWFILTKAQQARENMKRKEELKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PRSLRGLQMILNSDRYAPSLHELGHFNIPTLCDPANLQWFILTKAQQARENMKRKEELKV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 IENELIQASTKKFSLEKLYKEPSISSIQMVDCCKRLLEQSLPYLHGMHLCISHFYSVMQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 IENELIQASTKKFSLEKLYKEPSISSIQMVDCCKRLLEQSLPYLHGMHLCISHFYSVMQD
              430       440       450       460       470       480

              490      
pF1KE0 GDLCIPWNWKNGEAIK
       ::::::::::::::::
CCDS27 GDLCIPWNWKNGEAIK
              490      

>>CCDS43076.1 TCAIM gene_id:285343|Hs108|chr3             (70 aa)
 initn: 413 init1: 413 opt: 414  Z-score: 506.4  bits: 100.4 E(32554): 6.9e-22
Smith-Waterman score: 414; 88.9% identity (96.8% similar) in 63 aa overlap (1-63:1-63)

               10        20        30        40        50        60
pF1KE0 MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVEREINEN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::. . .
CCDS43 MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SLKRLSVYLENLQKPGFKSLKPTQLTFYVRETDQSSSDGQEPFSTSGFRAVKFTLHTRDL
       :..                                                         
CCDS43 SFQCPSDFSL                                                  
               70                                                  




496 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:02:51 2016 done: Fri Nov  4 07:02:51 2016
 Total Scan time:  3.190 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]