FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0025, 574 aa
  1>>>pF1KE0025 574 - 574 aa - 574 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6531+/-0.00101; mu= 16.8435+/- 0.061
 mean_var=72.5374+/-14.475, 0's: 0 Z-trim(103.9): 26  B-trim: 3 in 1/48
 Lambda= 0.150589
 statistics sampled from 7624 (7633) to 7624 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.597), E-opt: 0.2 (0.234), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS47918.1 SQLE gene_id:6713|Hs108|chr8           ( 574) 3741 822.5       0


>>CCDS47918.1 SQLE gene_id:6713|Hs108|chr8                (574 aa)
 initn: 3741 init1: 3741 opt: 3741  Z-score: 4391.8  bits: 822.5 E(32554):    0
Smith-Waterman score: 3741; 99.1% identity (99.5% similar) in 574 aa overlap (1-574:1-574)

               10        20        30        40        50        60
pF1KE0 MWTFLGIATFTYFYKKFGDFITLANREVLLCVLVFLSLGLVLFYRCRHRNGGLLGRQQSG
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
CCDS47 MWTFLGIATFTYFYKKFGDFITLANREVLLCVLVFLSLGLVLSYRCRHRNGGLLGRQQSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 SQFALFSDILSGLPFIGFFWAKSPPESENKEQLEARRRRKGTNISETSLIGTAACTSTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SQFALFSDILSGLPFIGFFWAKSPPESENKEQLEARRRRKGTNISETSLIGTAACTSTSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 QNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QNDPEVIIVGAGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 GDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 PNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 SVSSHFVGFLMKNAPQFKANHAELILANPSPVLTYQISSSETRVLVDIRGEMPRNLREYM
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
CCDS47 SVSSHFVGFLMKNAPQFKANHAELILANPSPVLIYQISSSETRVLVDIRGEMPRNLREYM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 VEKIYPQIPDHLKEPSLEVADNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGG
       ::::::::::::::: ::..::::::::::::::::::::::::::::::::::::::::
CCDS47 VEKIYPQIPDHLKEPFLEATDNSHLRSMPASFLPPSSVKKRGVLLLGDAYNMRHPLTGGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 MTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFVVNILAQALYELFSAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MTVAFKDIKLWRKLLKGIPDLYDDAAIFEAKKSFYWARKTSHSFVVNILAQALYELFSAT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DDSLHQLRKACFLYFKLGGECVAGPVGLLSVLSPNPLVLIGHFFAVAIYAVYFCFKSEPW
              490       500       510       520       530       540

              550       560       570    
pF1KE0 ITKPRALLSSGAVLYKACSVIFPLIYSEMKYMVH
       ::::::::::::::::::::::::::::::::::
CCDS47 ITKPRALLSSGAVLYKACSVIFPLIYSEMKYMVH
              550       560       570    




574 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:14:40 2016 done: Fri Nov  4 08:14:41 2016
 Total Scan time:  3.460 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]