FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0023, 955 aa
  1>>>pF1KE0023 955 - 955 aa - 955 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6700+/-0.00113; mu= 15.0063+/- 0.068
 mean_var=100.2207+/-19.944, 0's: 0 Z-trim(105.3): 25  B-trim: 13 in 1/49
 Lambda= 0.128114
 statistics sampled from 8364 (8372) to 8364 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.257), width:  16
 Scan time:  3.970

The best scores are:                                      opt bits E(32554)
CCDS6489.1 HAUS6 gene_id:54801|Hs108|chr9          ( 955) 6321 1179.7       0


>>CCDS6489.1 HAUS6 gene_id:54801|Hs108|chr9               (955 aa)
 initn: 6321 init1: 6321 opt: 6321  Z-score: 6313.9  bits: 1179.7 E(32554):    0
Smith-Waterman score: 6321; 99.9% identity (99.9% similar) in 955 aa overlap (1-955:1-955)

               10        20        30        40        50        60
pF1KE0 MSSASVTAFEKEHLWMYLQALGFEPGPATIACGKIVSHTHLGVNMFDKLNRDAFHIISYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSSASVTAFEKEHLWMYLQALGFEPGPATIACGKIVSHTHLGVNMFDKLNRDAFHIISYF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 LFQVLDQSLTKEVFKFCWPPFDQKSDTEFRKHCCEWIKRISGECGSSFPQVVGSLFLSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LFQVLDQSLTKEVFKFCWPPFDQKSDTEFRKHCCEWIKRISGECGSSFPQVVGSLFLSPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 GPKFIHLMYHFARFVAMKYIKSNSKNSSHHFVETFNIKPQDLHKCIARCHFARSRFLQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GPKFIHLMYHFARFVAMKYIKSNSKNSSHHFVETFNIKPQDLHKCIARCHFARSRFLQIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QRQDCVTQKYQENAQLSVKQVRNLRSECIGLENQIKKMEPYDDHSNMEEKIQKVRSLWAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QRQDCVTQKYQENAQLSVKQVRNLRSECIGLENQIKKMEPYDDHSNMEEKIQKVRSLWAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 VNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLLDKIEKQMFQLHIGNVYEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VNETLMFLEKEREVVSSVLSLVNQYALDGTNVAINIPRLLLDKIEKQMFQLHIGNVYEAG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KLNLLTVIQLLNEVLKVMKYERCQADQARLTVDLHYLEKETKFQKERLSDLKHMRYRIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KLNLLTVIQLLNEVLKVMKYERCQADQARLTVDLHYLEKETKFQKERLSDLKHMRYRIKD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 DLTTIRHSVVEKQGEWHKKWKEFLGLSPFSLIKGWTPSVDLLPPMSPLSFDPASEEVYAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DLTTIRHSVVEKQGEWHKKWKEFLGLSPFSLIKGWTPSVDLLPPMSPLSFDPASEEVYAK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 SILCQYPASLPDAHKQHNQENGCRGDSDTLGALHDLANSPASFLSQSVSSSDRNSVTVLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SILCQYPASLPDAHKQHNQENGCRGDSDTLGALHDLANSPASFLSQSVSSSDRNSVTVLE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 KDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTESSAFGGSLPAKKSDPFQKEQDHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KDTKMGTPKEKNEAISKKIPEFEVENSPLSDVAKNTESSAFGGSLPAKKSDPFQKEQDHL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 VEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFLTRNQIPRTPENLITEIRSSWRKAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VEEVARAVLSDSPQLSEGKEIKLEELIDSLGSNPFLTRNQIPRTPENLITEIRSSWRKAI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 EMEENRTKEPIQMDAEHREVLPESLPVLHNQREFSMADFLLETTVSDFGQSHLTEEKVIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EMEENRTKEPIQMDAEHREVLPESLPVLHNQREFSMADFLLETTVSDFGQSHLTEEKVIS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE0 DCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICKQDLECLAFTKLSETSRMETFSPAVGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 DCECVPQKHVLTSHIDEPPTQNQSDLLNKKVICKQDLECLAFTKLSETSRMETFSPAVGN
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE0 RIDVMGGSEEEFMKILDHLEVSCNKPSTNKTMLWNSFQISSGISSKSFKDNDFGILHETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RIDVMGGSEEEFMKILDHLEVSCNKPSTNKTMLWNSFQISSGISSKSFKDNDFGILHETL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE0 PEEVGHLSFNSSSSSEANFKLEPNSPMHGGTLLEDVVGGRQTTPESDFNLQALRSRYEAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PEEVGHLSFNSSSSSEANFKLEPNSPMHGGTLLEDVVGGRQTTPESDFNLQALRSRYEAL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE0 KKSLSKKREESYLSNSQTPERHKPELSPTPQNVQTDDTLNFLDTCDLHTEHIKPSLRTSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KKSLSKKREESYLSNSQTPERHKPELSPTPQNVQTDDTLNFLDTCDLHTEHIKPSLRTSI
              850       860       870       880       890       900

              910       920       930       940       950     
pF1KE0 GEIKRSLSPLIKFSPVEQRLRTTIACSLGELPNLKEEDILNKSLDAKEPPSDLTR
       :: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GERKRSLSPLIKFSPVEQRLRTTIACSLGELPNLKEEDILNKSLDAKEPPSDLTR
              910       920       930       940       950     




955 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:15:56 2016 done: Fri Nov  4 08:15:57 2016
 Total Scan time:  3.970 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]