FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0015, 651 aa
  1>>>pF1KE0015 651 - 651 aa - 651 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3770+/-0.000891; mu= 9.6764+/- 0.054
 mean_var=116.8099+/-22.722, 0's: 0 Z-trim(109.7): 22  B-trim: 0 in 0/50
 Lambda= 0.118668
 statistics sampled from 11065 (11082) to 11065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.34), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS9441.1 TDRD3 gene_id:81550|Hs108|chr13         ( 651) 4389 762.6       0
CCDS53872.1 TDRD3 gene_id:81550|Hs108|chr13        ( 744) 4389 762.7       0


>>CCDS9441.1 TDRD3 gene_id:81550|Hs108|chr13              (651 aa)
 initn: 4389 init1: 4389 opt: 4389  Z-score: 4066.2  bits: 762.6 E(32554):    0
Smith-Waterman score: 4389; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KE0 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KE0 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN
              610       620       630       640       650 

>>CCDS53872.1 TDRD3 gene_id:81550|Hs108|chr13             (744 aa)
 initn: 4389 init1: 4389 opt: 4389  Z-score: 4065.3  bits: 762.7 E(32554):    0
Smith-Waterman score: 4389; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:94-744)

                                             10        20        30
pF1KE0                               MLRLQMTDGHISCTAVEFSYMSKISLNTPP
                                     ::::::::::::::::::::::::::::::
CCDS53 KLEGPCVLQIQKIRNVAAPKDNEESQAAPRMLRLQMTDGHISCTAVEFSYMSKISLNTPP
            70        80        90       100       110       120   

               40        50        60        70        80        90
pF1KE0 GTKVKLSGIVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNIGTEGGPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GTKVKLSGIVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNIGTEGGPPP
           130       140       150       160       170       180   

              100       110       120       130       140       150
pF1KE0 FVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFEKQRTAAIAEVAKSKETKTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFEKQRTAAIAEVAKSKETKTF
           190       200       210       220       230       240   

              160       170       180       190       200       210
pF1KE0 GGGGGGARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GGGGGGARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKE
           250       260       270       280       290       300   

              220       230       240       250       260       270
pF1KE0 ASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAP
           310       320       330       340       350       360   

              280       290       300       310       320       330
pF1KE0 STLFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 STLFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRN
           370       380       390       400       410       420   

              340       350       360       370       380       390
pF1KE0 EKPPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKPPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDT
           430       440       450       460       470       480   

              400       410       420       430       440       450
pF1KE0 SYPLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SYPLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIP
           490       500       510       520       530       540   

              460       470       480       490       500       510
pF1KE0 DYFYDRKSQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVEMPLKGRRIGPI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DYFYDRKSQTINNEAFSGIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVEMPLKGRRIGPI
           550       560       570       580       590       600   

              520       530       540       550       560       570
pF1KE0 KPAGPVTAVPCDDKIFYNSGPKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KPAGPVTAVPCDDKIFYNSGPKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDN
           610       620       630       640       650       660   

              580       590       600       610       620       630
pF1KE0 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEEEGTYDQTLEFRRGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWEEEGTYDQTLEFRRGGD
           670       680       690       700       710       720   

              640       650 
pF1KE0 GQPRRSTRPTQQFYQPPRARN
       :::::::::::::::::::::
CCDS53 GQPRRSTRPTQQFYQPPRARN
           730       740    




651 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:06:05 2016 done: Sat Nov  5 22:06:05 2016
 Total Scan time:  2.640 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]