FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0005, 701 aa
  1>>>pF1KE0005 701 - 701 aa - 701 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9862+/-0.00118; mu= 16.3486+/- 0.071
 mean_var=72.4367+/-14.288, 0's: 0 Z-trim(101.6): 30  B-trim: 0 in 0/49
 Lambda= 0.150694
 statistics sampled from 6600 (6608) to 6600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.55), E-opt: 0.2 (0.203), width:  16
 Scan time:  3.260

The best scores are:                                      opt bits E(32554)
CCDS8743.1 PUS7L gene_id:83448|Hs108|chr12         ( 701) 4652 1021.3       0
CCDS61104.1 PUS7L gene_id:83448|Hs108|chr12        ( 388) 2576 569.9 2.4e-162


>>CCDS8743.1 PUS7L gene_id:83448|Hs108|chr12              (701 aa)
 initn: 4652 init1: 4652 opt: 4652  Z-score: 5463.0  bits: 1021.3 E(32554):    0
Smith-Waterman score: 4652; 100.0% identity (100.0% similar) in 701 aa overlap (1-701:1-701)

               10        20        30        40        50        60
pF1KE0 MEEDTDYRIRFSSLCFFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MEEDTDYRIRFSSLCFFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 QLEPNNFPKKPKLDLQNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QLEPNNFPKKPKLDLQNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 KADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 QKFPFLVTVGKNSEIVVKPNLEYKELCHLVSEEEAFDFFKYLDAKKENSKFTFKPDTNKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 QKFPFLVTVGKNSEIVVKPNLEYKELCHLVSEEEAFDFFKYLDAKKENSKFTFKPDTNKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 HRKAVHHFVNKKFGNLVETKSFSKMNCSAGNPNVVVTVRFREKAHKRGKRPLSECQEGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 HRKAVHHFVNKKFGNLVETKSFSKMNCSAGNPNVVVTVRFREKAHKRGKRPLSECQEGKV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 IYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 IYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKN
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 IEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 IEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 KKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLDDPVNRAKKYFLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLDDPVNRAKKYFLQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE0 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 TEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE0 EAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEEGSANMYAIHQVVLPVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEEGSANMYAIHQVVLPVLG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE0 YNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 YNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHD
              610       620       630       640       650       660

              670       680       690       700 
pF1KE0 IDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV
       :::::::::::::::::::::::::::::::::::::::::
CCDS87 IDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV
              670       680       690       700 

>>CCDS61104.1 PUS7L gene_id:83448|Hs108|chr12             (388 aa)
 initn: 2576 init1: 2576 opt: 2576  Z-score: 3028.0  bits: 569.9 E(32554): 2.4e-162
Smith-Waterman score: 2576; 100.0% identity (100.0% similar) in 388 aa overlap (314-701:1-388)

           290       300       310       320       330       340   
pF1KE0 AHKRGKRPLSECQEGKVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAI
                                     ::::::::::::::::::::::::::::::
CCDS61                               MFEAIGFLAIKLGVIPSDFSYAGLKDKKAI
                                             10        20        30

           350       360       370       380       390       400   
pF1KE0 TYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 TYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQI
               40        50        60        70        80        90

           410       420       430       440       450       460   
pF1KE0 NDSANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 NDSANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLT
              100       110       120       130       140       150

           470       480       490       500       510       520   
pF1KE0 PEDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 PEDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLP
              160       170       180       190       200       210

           530       540       550       560       570       580   
pF1KE0 HSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 HSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEE
              220       230       240       250       260       270

           590       600       610       620       630       640   
pF1KE0 GSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 GSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQ
              280       290       300       310       320       330

           650       660       670       680       690       700 
pF1KE0 ILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 ILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV
              340       350       360       370       380        




701 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:40:11 2016 done: Fri Nov  4 08:40:12 2016
 Total Scan time:  3.260 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]