FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE0003, 514 aa
  1>>>pF1KE0003 514 - 514 aa - 514 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3378+/-0.00107; mu= 17.6791+/- 0.064
 mean_var=60.0808+/-12.420, 0's: 0 Z-trim(101.9): 30  B-trim: 0 in 0/50
 Lambda= 0.165465
 statistics sampled from 6690 (6698) to 6690 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.206), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS8745.1 TMEM117 gene_id:84216|Hs108|chr12       ( 514) 3520 849.2       0
CCDS73462.1 TMEM117 gene_id:84216|Hs108|chr12      ( 268) 1740 424.2  9e-119


>>CCDS8745.1 TMEM117 gene_id:84216|Hs108|chr12            (514 aa)
 initn: 3520 init1: 3520 opt: 3520  Z-score: 4537.8  bits: 849.2 E(32554):    0
Smith-Waterman score: 3520; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)

               10        20        30        40        50        60
pF1KE0 MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANVIVVGNCFSFVTNKYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANVIVVGNCFSFVTNKYPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GVGWRILKVLLWLLAILTGLIAGKFLFHQRLFGQLLRLKMFREDHGSWMTMFFSTILFLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GVGWRILKVLLWLLAILTGLIAGKFLFHQRLFGQLLRLKMFREDHGSWMTMFFSTILFLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IFSHIYNTILLMDGNMGAYIITDYMGIRNESFMKLAAVGTWMGDFVTAWMVTDMMLQDKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 IFSHIYNTILLMDGNMGAYIITDYMGIRNESFMKLAAVGTWMGDFVTAWMVTDMMLQDKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YPDWGKSARAFWKKGNVRITLFWTVLFTLTSVVVLVITTDWISWDKLNRGFLPSDEVSRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 YPDWGKSARAFWKKGNVRITLFWTVLFTLTSVVVLVITTDWISWDKLNRGFLPSDEVSRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FLASFILVFDLLIVMQDWEFPHFMGDVDVNLPGLHTPHMQFKIPFFQKIFKEEYRIHITG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 FLASFILVFDLLIVMQDWEFPHFMGDVDVNLPGLHTPHMQFKIPFFQKIFKEEYRIHITG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE0 KWFNYGIIFLVLILDLNMWKNQIFYKPHEYGQYIGPGQKIYTVKDSESLKDLNRTKLSWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 KWFNYGIIFLVLILDLNMWKNQIFYKPHEYGQYIGPGQKIYTVKDSESLKDLNRTKLSWE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE0 WRSNHTNPRTNKTYVEGDMFLHSRFIGASLDVKCLAFVPSLIAFVWFGFFIWFFGRFLKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 WRSNHTNPRTNKTYVEGDMFLHSRFIGASLDVKCLAFVPSLIAFVWFGFFIWFFGRFLKN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE0 EPRMENQDKTYTRMKRKSPSEHSKDMGITRENTQASVEDPLNDPSLVCIRSDFNEIVYKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 EPRMENQDKTYTRMKRKSPSEHSKDMGITRENTQASVEDPLNDPSLVCIRSDFNEIVYKS
              430       440       450       460       470       480

              490       500       510    
pF1KE0 SHLTSENLSSQLNESTSATEADQDPTTSKSTPTN
       ::::::::::::::::::::::::::::::::::
CCDS87 SHLTSENLSSQLNESTSATEADQDPTTSKSTPTN
              490       500       510    

>>CCDS73462.1 TMEM117 gene_id:84216|Hs108|chr12           (268 aa)
 initn: 1740 init1: 1740 opt: 1740  Z-score: 2245.8  bits: 424.2 E(32554): 9e-119
Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 256 aa overlap (1-256:1-256)

               10        20        30        40        50        60
pF1KE0 MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANVIVVGNCFSFVTNKYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANVIVVGNCFSFVTNKYPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE0 GVGWRILKVLLWLLAILTGLIAGKFLFHQRLFGQLLRLKMFREDHGSWMTMFFSTILFLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GVGWRILKVLLWLLAILTGLIAGKFLFHQRLFGQLLRLKMFREDHGSWMTMFFSTILFLF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE0 IFSHIYNTILLMDGNMGAYIITDYMGIRNESFMKLAAVGTWMGDFVTAWMVTDMMLQDKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IFSHIYNTILLMDGNMGAYIITDYMGIRNESFMKLAAVGTWMGDFVTAWMVTDMMLQDKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE0 YPDWGKSARAFWKKGNVRITLFWTVLFTLTSVVVLVITTDWISWDKLNRGFLPSDEVSRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YPDWGKSARAFWKKGNVRITLFWTVLFTLTSVVVLVITTDWISWDKLNRGFLPSDEVSRA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE0 FLASFILVFDLLIVMQDWEFPHFMGDVDVNLPGLHTPHMQFKIPFFQKIFKEEYRIHITG
       ::::::::::::::::                                            
CCDS73 FLASFILVFDLLIVMQANGLTMELSSSS                                
              250       260                                        




514 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:47:34 2016 done: Fri Nov  4 08:47:35 2016
 Total Scan time:  2.890 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]