Result of FASTA (ccds) for
pF1KB9980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9980, 708 aa
1>>>pF1KB9980 708 - 708 aa - 708 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1216+/-0.00123; mu= 12.8931+/- 0.073
mean_var=144.8660+/-28.800, 0's: 0 Z-trim(105.7): 28 B-trim: 0 in 0/52
Lambda= 0.106559
statistics sampled from 8545 (8550) to 8545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.263), width: 16
Scan time: 3.850
The best scores are: opt bits E(32554)
CCDS8299.1 MRE11 gene_id:4361|Hs108|chr11 ( 708) 4644 726.5 3.4e-209
CCDS81617.1 MRE11 gene_id:4361|Hs108|chr11 ( 707) 4627 723.8 2e-208
CCDS8298.1 MRE11 gene_id:4361|Hs108|chr11 ( 680) 3950 619.8 4.3e-177
>>CCDS8299.1 MRE11 gene_id:4361|Hs108|chr11 (708 aa)
initn: 4644 init1: 4644 opt: 4644 Z-score: 3869.3 bits: 726.5 E(32554): 3.4e-209
Smith-Waterman score: 4644; 100.0% identity (100.0% similar) in 708 aa overlap (1-708:1-708)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
610 620 630 640 650 660
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
670 680 690 700
>>CCDS81617.1 MRE11 gene_id:4361|Hs108|chr11 (707 aa)
initn: 4625 init1: 3930 opt: 4627 Z-score: 3855.2 bits: 723.8 E(32554): 2e-208
Smith-Waterman score: 4627; 99.9% identity (99.9% similar) in 708 aa overlap (1-708:1-707)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS81 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGR-DTGLE
550 560 570 580 590
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
600 610 620 630 640 650
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
660 670 680 690 700
>>CCDS8298.1 MRE11 gene_id:4361|Hs108|chr11 (680 aa)
initn: 3976 init1: 3935 opt: 3950 Z-score: 3292.9 bits: 619.8 E(32554): 4.3e-177
Smith-Waterman score: 4415; 96.0% identity (96.0% similar) in 708 aa overlap (1-708:1-680)
10 20 30 40 50 60
pF1KB9 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSTADALDDENTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEVDFILLGGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LFHENKPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PVFSIHGNHDDPTGADALCALDILSCAGFVNHFGRSMSVEKIDISPVLLQKGSTKIALYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGSIPDERLYRMFVNKKVTMLRPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VIWGHEHECKIAPTKNEQQLFYISQPGSSVVTSLSPGEAVKKHVGLLRIKGRKMNMHKIP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LHTVRQFFMEDIVLANHPDIFNPDNPKVTQAIQSFCLEKIEEMLENAERERLGNSHQPEK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PLVRLRVDYSGGFEPFSVLRFSQKFVDRVANPKDIIHFFRHREQKEKTGEEINFGKLITK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PSEGTTLRVEDLVKQYFQTAEKNVQLSLLTERGMGEAVQEFVDKEEKDAIEELVKYQLEK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TQRFLKERHIDALEDKIDEEVRRFRETRQKNTNEEDDEVREAMTRARALRSQSEESASAF
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRADTGLE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SADDLMSIDLAEQMANDSDDSISAATNKGRGRGRGRRGGRGQNSASRGGSQRGRA-----
550 560 570 580 590
610 620 630 640 650 660
pF1KB9 TSTRSRNSKTAVSASRNMSIIDAFKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
:::::::::::::::::::::::::::::::::::::
CCDS82 -----------------------FKSTRQQPSRNVTTKNYSEVIEVDESDVEEDIFPTTS
600 610 620 630
670 680 690 700
pF1KB9 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KTDQRWSSTSSSKIMSQSQVSKGVDFESSEDDDDDPFMNTSSLRRNRR
640 650 660 670 680
708 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 18:55:48 2016 done: Sat Nov 5 18:55:49 2016
Total Scan time: 3.850 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]