FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9979, 558 aa
  1>>>pF1KB9979 558 - 558 aa - 558 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7967+/-0.00092; mu= 15.5011+/- 0.055
 mean_var=63.7314+/-12.940, 0's: 0 Z-trim(105.0): 9  B-trim: 0 in 0/50
 Lambda= 0.160656
 statistics sampled from 8182 (8186) to 8182 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.251), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS35071.1 FANCC gene_id:2176|Hs108|chr9          ( 558) 3742 876.3       0
CCDS75861.1 FANCC gene_id:2176|Hs108|chr9          ( 492) 3004 705.2 4.5e-203


>>CCDS35071.1 FANCC gene_id:2176|Hs108|chr9               (558 aa)
 initn: 3742 init1: 3742 opt: 3742  Z-score: 4682.8  bits: 876.3 E(32554):    0
Smith-Waterman score: 3742; 100.0% identity (100.0% similar) in 558 aa overlap (1-558:1-558)

               10        20        30        40        50        60
pF1KB9 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 APAQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 APAQQLIRHLLLNFLLWAPGGHTIAWDVITLMAHTAEITHEIIGFLDQTLYRWNRLGIES
              490       500       510       520       530       540

              550        
pF1KB9 PRSEKLARELLKELRTQV
       ::::::::::::::::::
CCDS35 PRSEKLARELLKELRTQV
              550        

>>CCDS75861.1 FANCC gene_id:2176|Hs108|chr9               (492 aa)
 initn: 3004 init1: 3004 opt: 3004  Z-score: 3759.2  bits: 705.2 E(32554): 4.5e-203
Smith-Waterman score: 3004; 99.8% identity (100.0% similar) in 444 aa overlap (1-444:1-444)

               10        20        30        40        50        60
pF1KB9 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAQDSVDLSCDYQFWMQKLSVWDQASTLETQQDTCLHVAQFQEFLRKMYEALKEMDSNTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IERFPTIGQLLAKACWNPFILAYDESQKILIWCLCCLINKEPQNSGQSKLNSWIQGVLSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ILSALRFDKEVALFTQGLGYAPIDYYPGLLKNMVLSLASELRENHLNGFNTQRRMAPERV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ASLSRVCVPLITLTDVDPLVEALLICHGREPQEILQPEFFEAVNEAILLKKISLPMSAVV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CLWLRHLPSLEKAMLHLFEKLISSERNCLRRIECFIKDSSLPQAACHPAIFRVVDEMFRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ALLETDGALEIIATIQVFTQCFVEALEKASKQLRFALKTYFPYTSPSLAMVLLQDPQDIP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RGHWLQTLKHISELLREAVEDQTHGSCGGPFESWFLFIHFGGWAEMVAEQLLMSAAEPPT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 ALLWLLAFYYGPRDGRQQRAQTMVQVKAVLGHLLAMSRSSSLSAQDLQTVAGQGTDTDLR
       :::::::::::::::::::::::.                                    
CCDS75 ALLWLLAFYYGPRDGRQQRAQTMMAYVMATCRHGDLQPCGQRRSPVPTEVARDETLPAHS
              430       440       450       460       470       480




558 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:08:52 2016 done: Sat Nov  5 08:08:53 2016
 Total Scan time:  3.350 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]