Result of FASTA (omim) for
pF1KB9957
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9957, 538 aa
1>>>pF1KB9957 538 - 538 aa - 538 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3287+/-0.000454; mu= 18.5388+/- 0.028
mean_var=74.1642+/-15.054, 0's: 0 Z-trim(109.2): 27 B-trim: 0 in 0/54
Lambda= 0.148928
statistics sampled from 17315 (17335) to 17315 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.555), E-opt: 0.2 (0.203), width: 16
Scan time: 7.050
The best scores are: opt bits E(85289)
XP_006711560 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 538) 3541 770.9 0
XP_016857671 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 538) 3541 770.9 0
NP_001166995 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 538) 3541 770.9 0
NP_004591 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleo ( 538) 3541 770.9 0
XP_016857670 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 538) 3541 770.9 0
NP_001035829 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 534) 3479 757.6 2.2e-218
NP_001035828 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 525) 3379 736.1 6.3e-212
NP_001166996 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 518) 3376 735.4 9.7e-212
XP_016857669 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 560) 2241 491.6 2.6e-138
XP_006711558 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 560) 2241 491.6 2.6e-138
XP_006711559 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 560) 2241 491.6 2.6e-138
XP_011508224 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 263) 1731 381.8 1.4e-105
NP_001317949 (OMIM: 600063) 60 kDa SS-A/Ro ribonuc ( 263) 1731 381.8 1.4e-105
XP_016857672 (OMIM: 600063) PREDICTED: 60 kDa SS-A ( 263) 1731 381.8 1.4e-105
>>XP_006711560 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro (538 aa)
initn: 3541 init1: 3541 opt: 3541 Z-score: 4113.8 bits: 770.9 E(85289): 0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
490 500 510 520 530
>>XP_016857671 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro (538 aa)
initn: 3541 init1: 3541 opt: 3541 Z-score: 4113.8 bits: 770.9 E(85289): 0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
490 500 510 520 530
>>NP_001166995 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop (538 aa)
initn: 3541 init1: 3541 opt: 3541 Z-score: 4113.8 bits: 770.9 E(85289): 0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
490 500 510 520 530
>>NP_004591 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleoprot (538 aa)
initn: 3541 init1: 3541 opt: 3541 Z-score: 4113.8 bits: 770.9 E(85289): 0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
490 500 510 520 530
>>XP_016857670 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro (538 aa)
initn: 3541 init1: 3541 opt: 3541 Z-score: 4113.8 bits: 770.9 E(85289): 0
Smith-Waterman score: 3541; 100.0% identity (100.0% similar) in 538 aa overlap (1-538:1-538)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
490 500 510 520 530
>>NP_001035829 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop (534 aa)
initn: 3479 init1: 3479 opt: 3479 Z-score: 4041.8 bits: 757.6 E(85289): 2.2e-218
Smith-Waterman score: 3479; 100.0% identity (100.0% similar) in 528 aa overlap (1-528:1-528)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDPCKIPY
490 500 510 520 530
>>NP_001035828 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop (525 aa)
initn: 3379 init1: 3379 opt: 3379 Z-score: 3925.8 bits: 736.1 E(85289): 6.3e-212
Smith-Waterman score: 3379; 99.6% identity (100.0% similar) in 516 aa overlap (1-516:1-516)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::..
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRALQNTLLNKSF
490 500 510 520
>>NP_001166996 (OMIM: 600063) 60 kDa SS-A/Ro ribonucleop (518 aa)
initn: 3376 init1: 3376 opt: 3376 Z-score: 3922.4 bits: 735.4 E(85289): 9.7e-212
Smith-Waterman score: 3376; 100.0% identity (100.0% similar) in 514 aa overlap (1-514:1-514)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLLRLSHLKPSSEGLAIVTKYITKGWKEVHELYKEKALSVETEKLLKYLEAVEKVKRTRD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPLTALLRNLGKMTANSVLEPGNSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLRGKLKWRPDEEILKALDAAFYKT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAAMCMVVTRTEKDSYVVAFSDEMV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTNTPADVFIVFTDNETFAGGVHPA
430 440 450 460 470 480
490 500 510 520 530
pF1KB9 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLDMCGFDTGALDVIRNFTLDMI
::::::::::::::::::::::::::::::::::
NP_001 IALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRDTVK
490 500 510
>>XP_016857669 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro (560 aa)
initn: 3519 init1: 2234 opt: 2241 Z-score: 2604.0 bits: 491.6 E(85289): 2.6e-138
Smith-Waterman score: 3477; 96.1% identity (96.1% similar) in 560 aa overlap (1-538:1-560)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210
pF1KB9 DLLRLSHLKPSSE----------G------------LAIVTKYITKGWKEVHELYKEKAL
::::::::::::: : ::::::::::::::::::::::::
XP_016 DLLRLSHLKPSSEVKLEKTATQKGGFTFQFCGLKPRLAIVTKYITKGWKEVHELYKEKAL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB9 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB9 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB9 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB9 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB9 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
490 500 510 520 530 540
520 530
pF1KB9 MCGFDTGALDVIRNFTLDMI
::::::::::::::::::::
XP_016 MCGFDTGALDVIRNFTLDMI
550 560
>>XP_006711558 (OMIM: 600063) PREDICTED: 60 kDa SS-A/Ro (560 aa)
initn: 3519 init1: 2234 opt: 2241 Z-score: 2604.0 bits: 491.6 E(85289): 2.6e-138
Smith-Waterman score: 3477; 96.1% identity (96.1% similar) in 560 aa overlap (1-538:1-560)
10 20 30 40 50 60
pF1KB9 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MEESVNQMQPLNEKQIANSQDGYVWQVTDMNRLHRFLCFGSEGGTYYIKEQKLGLENAEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LIRLIEDGRGCEVIQEIKSFSQEGRTTKQEPMLFALAICSQCSDISTKQAAFKAVSEVCR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IPTHLFTFIQFKKDLKESMKCGMWGRALRKAIADWYNEKGGMALALAVTKYKQRNGWSHK
130 140 150 160 170 180
190 200 210
pF1KB9 DLLRLSHLKPSSE----------G------------LAIVTKYITKGWKEVHELYKEKAL
::::::::::::: : ::::::::::::::::::::::::
XP_006 DLLRLSHLKPSSEVKLEKTATQKGGFTFQFCGLKPRLAIVTKYITKGWKEVHELYKEKAL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB9 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SVETEKLLKYLEAVEKVKRTRDELEVIHLIEEHRLVREHLLTNHLKSKEVWKALLQEMPL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB9 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGHGLR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB9 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTVAAA
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB9 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQKTN
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB9 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRGMLD
490 500 510 520 530 540
520 530
pF1KB9 MCGFDTGALDVIRNFTLDMI
::::::::::::::::::::
XP_006 MCGFDTGALDVIRNFTLDMI
550 560
538 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:17:47 2016 done: Sat Nov 5 08:17:48 2016
Total Scan time: 7.050 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]