Result of FASTA (ccds) for
pF1KB9937
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9937, 522 aa
1>>>pF1KB9937 522 - 522 aa - 522 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3681+/-0.000849; mu= 9.8853+/- 0.051
mean_var=136.5455+/-27.319, 0's: 0 Z-trim(111.6): 27 B-trim: 11 in 1/51
Lambda= 0.109758
statistics sampled from 12490 (12513) to 12490 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.384), width: 16
Scan time: 2.920
The best scores are: opt bits E(32554)
CCDS32266.1 SNX1 gene_id:6642|Hs108|chr15 ( 522) 3365 544.2 1.3e-154
CCDS58371.1 SNX1 gene_id:6642|Hs108|chr15 ( 557) 3260 527.6 1.4e-149
CCDS32268.1 SNX1 gene_id:6642|Hs108|chr15 ( 457) 2350 383.5 2.8e-106
CCDS34217.1 SNX2 gene_id:6643|Hs108|chr5 ( 519) 1894 311.3 1.7e-84
CCDS64234.1 SNX2 gene_id:6643|Hs108|chr5 ( 402) 1869 307.3 2.2e-83
>>CCDS32266.1 SNX1 gene_id:6642|Hs108|chr15 (522 aa)
initn: 3365 init1: 3365 opt: 3365 Z-score: 2889.2 bits: 544.2 E(32554): 1.3e-154
Smith-Waterman score: 3365; 100.0% identity (100.0% similar) in 522 aa overlap (1-522:1-522)
10 20 30 40 50 60
pF1KB9 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR
430 440 450 460 470 480
490 500 510 520
pF1KB9 FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
::::::::::::::::::::::::::::::::::::::::::
CCDS32 FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
490 500 510 520
>>CCDS58371.1 SNX1 gene_id:6642|Hs108|chr15 (557 aa)
initn: 3260 init1: 3260 opt: 3260 Z-score: 2799.0 bits: 527.6 E(32554): 1.4e-149
Smith-Waterman score: 3260; 100.0% identity (100.0% similar) in 506 aa overlap (1-506:1-506)
10 20 30 40 50 60
pF1KB9 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR
430 440 450 460 470 480
490 500 510 520
pF1KB9 FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
::::::::::::::::::::::::::
CCDS58 FEKEKSKDFKNHVIKYLETLLYSQQQAGEQLGIRSGILLTKKLPRYSKFFSTVHKFCAAA
490 500 510 520 530 540
>>CCDS32268.1 SNX1 gene_id:6642|Hs108|chr15 (457 aa)
initn: 2944 init1: 2349 opt: 2350 Z-score: 2021.5 bits: 383.5 E(32554): 2.8e-106
Smith-Waterman score: 2818; 87.5% identity (87.5% similar) in 522 aa overlap (1-522:1-457)
10 20 30 40 50 60
pF1KB9 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ITTSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQE
::::::::::::::::::::::::::::::
CCDS32 ITTSLLPINNGSKENGIHEEQDQEPQDLFA------------------------------
70 80 90
130 140 150 160 170 180
pF1KB9 ATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQ
:::::::::::::::::::::::::
CCDS32 -----------------------------------GDGMNAYVAYKVTTQTSLPLFRSKQ
100 110
190 200 210 220 230 240
pF1KB9 FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRA
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB9 ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTI
180 190 200 210 220 230
310 320 330 340 350 360
pF1KB9 KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDN
240 250 260 270 280 290
370 380 390 400 410 420
pF1KB9 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRW
300 310 320 330 340 350
430 440 450 460 470 480
pF1KB9 QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIR
360 370 380 390 400 410
490 500 510 520
pF1KB9 FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
::::::::::::::::::::::::::::::::::::::::::
CCDS32 FEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS
420 430 440 450
>>CCDS34217.1 SNX2 gene_id:6643|Hs108|chr5 (519 aa)
initn: 2009 init1: 1868 opt: 1894 Z-score: 1630.4 bits: 311.3 E(32554): 1.7e-84
Smith-Waterman score: 1971; 60.2% identity (80.1% similar) in 532 aa overlap (10-522:2-519)
10 20 30 40 50
pF1KB9 MASGGGGCSASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTG--AAVVSKHQS
:.:: :::. : ..: .. .:::.::. ... :. .:
CCDS34 MAAEREPPPL-----------GDGKPTDFEDLEDGEDLFTSTVSTLESSPSS
10 20 30 40
60 70 80 90 100
pF1KB9 PKITTSLLPINNGSKE-NGIHEEQ---DQEPQDLFADATVELSLDSTQNNQ---------
:. .. :: .. : . :: . . :.. .::::.:: :.:::: . .
CCDS34 PEPAS--LPAEDISANSNGPKPTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPA
50 60 70 80 90
110 120 130 140 150 160
pF1KB9 -KKVLAKTLISLPPQEATNSSKP---QPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNA
: :::. : :. . : : . . ::.::: . : ::. .:..::::.::::::
CCDS34 VTPVTPTTLIA-PRIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNA
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB9 YVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTK
:.::.:::.::: .: ...:.:::::::::::. ::. :. . :.:::: ::::..::::
CCDS34 YMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTK
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB9 VKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSG
::::::::::.::.::::::::::::: :.:::.:::::.:.:::. ::::::.::.:::
CCDS34 VKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSG
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB9 AGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELA
::.:.: :::.:::.:::::::::: ::::: :. : .:.:::::. ::.:: :::::.
CCDS34 AGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELS
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB9 LNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIR
::: :::: ::::.:::.:::::::::::::::::.::::::: ::....::::::::
CCDS34 ANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIR
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB9 LLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVT
:.: :...::.::: ::.:.::: :: :::::::... ::::::.::::.:: :::..:
CCDS34 LIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQ
400 410 420 430 440 450
470 480 490 500 510 520
pF1KB9 QYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAI
: :::::.:: ..:::: :::::. ::::. .:::::.:. .:::: :::::::::::::
CCDS34 QGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAI
460 470 480 490 500 510
pF1KB9 S
.
CCDS34 A
>>CCDS64234.1 SNX2 gene_id:6643|Hs108|chr5 (402 aa)
initn: 1893 init1: 1868 opt: 1869 Z-score: 1610.6 bits: 307.3 E(32554): 2.2e-83
Smith-Waterman score: 1869; 71.0% identity (89.6% similar) in 393 aa overlap (130-522:10-402)
100 110 120 130 140 150
pF1KB9 STQNNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGM
. ::.::: . : ::. .:..::::.::::
CCDS64 MSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGM
10 20 30
160 170 180 190 200 210
pF1KB9 NAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGM
:::.::.:::.::: .: ...:.:::::::::::. ::. :. . :.:::: ::::..::
CCDS64 NAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGM
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB9 TKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTL
::::::::::::.::.::::::::::::: :.:::.:::::.:.:::. ::::::.::.:
CCDS64 TKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQAL
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB9 SGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKE
::::.:.: :::.:::.:::::::::: ::::: :. : .:.:::::. ::.:: ::::
CCDS64 SGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKE
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB9 LALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDY
:. ::: :::: ::::.:::.:::::::::::::::::.::::::: ::....::::::
CCDS64 LSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDY
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB9 IRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESR
:::.: :...::.::: ::.:.::: :: :::::::... ::::::.::::.:: :::..
CCDS64 IRLIAAVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAK
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB9 VTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAK
: : :::::.:: ..:::: :::::. ::::. .:::::.:. .:::: :::::::::::
CCDS64 VQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAK
340 350 360 370 380 390
520
pF1KB9 AIS
::.
CCDS64 AIA
400
522 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:30:39 2016 done: Fri Nov 4 09:30:40 2016
Total Scan time: 2.920 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]