FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9913, 285 aa
  1>>>pF1KB9913 285 - 285 aa - 285 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9697+/-0.000309; mu= 13.7759+/- 0.019
 mean_var=103.2426+/-20.178, 0's: 0 Z-trim(119.0): 4  B-trim: 24 in 1/57
 Lambda= 0.126225
 statistics sampled from 32481 (32485) to 32481 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.381), width:  16
 Scan time:  5.710

The best scores are:                                      opt bits E(85289)
NP_060923 (OMIM: 609486) E2F-associated phosphopro ( 285) 1918 359.2 5.3e-99
XP_011535260 (OMIM: 609486) PREDICTED: E2F-associa ( 221) 1493 281.7 8.7e-76
XP_016876949 (OMIM: 609486) PREDICTED: E2F-associa ( 243) 1316 249.5 4.7e-66
NP_001305845 (OMIM: 609486) E2F-associated phospho ( 139)  767 149.3 3.8e-36


>>NP_060923 (OMIM: 609486) E2F-associated phosphoprotein  (285 aa)
 initn: 1918 init1: 1918 opt: 1918  Z-score: 1898.4  bits: 359.2 E(85289): 5.3e-99
Smith-Waterman score: 1918; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KB9 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE
              190       200       210       220       230       240

              250       260       270       280     
pF1KB9 DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS
       :::::::::::::::::::::::::::::::::::::::::::::
NP_060 DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS
              250       260       270       280     

>>XP_011535260 (OMIM: 609486) PREDICTED: E2F-associated   (221 aa)
 initn: 1493 init1: 1493 opt: 1493  Z-score: 1481.6  bits: 281.7 E(85289): 8.7e-76
Smith-Waterman score: 1493; 100.0% identity (100.0% similar) in 221 aa overlap (65-285:1-221)

           40        50        60        70        80        90    
pF1KB9 HGTPDQKRKLIRECLTGESESSSEDEFEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKV
                                     ::::::::::::::::::::::::::::::
XP_011                               MEAELNSTMKTMEDKLSSLGTGSSSGNGKV
                                             10        20        30

          100       110       120       130       140       150    
pF1KB9 ATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATAPTRYYDDIYFDSDSEDEDRAVQVTKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQ
               40        50        60        70        80        90

          160       170       180       190       200       210    
pF1KB9 RRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RRGYHGLGPQRSRQQQPVPNSDAVLNCPACMTTLCLDCQRHESYKTQYRAMFVMNCSINK
              100       110       120       130       140       150

          220       230       240       250       260       270    
pF1KB9 EEVLRYKASENRKKRRVHKKMRSNREDAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEVLRYKASENRKKRRVHKKMRSNREDAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEV
              160       170       180       190       200       210

          280     
pF1KB9 FHFFNVLASHS
       :::::::::::
XP_011 FHFFNVLASHS
              220 

>>XP_016876949 (OMIM: 609486) PREDICTED: E2F-associated   (243 aa)
 initn: 1460 init1: 1316 opt: 1316  Z-score: 1306.9  bits: 249.5 E(85289): 4.7e-66
Smith-Waterman score: 1316; 99.5% identity (100.0% similar) in 195 aa overlap (1-195:1-195)

               10        20        30        40        50        60
pF1KB9 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE
       ::::::::::::::.                                             
XP_016 CPACMTTLCLDCQRQTVAEWINKQDSTICCLEETCFTCKDTWTEHEWEKIFHAAGNQYRN
              190       200       210       220       230       240

>>NP_001305845 (OMIM: 609486) E2F-associated phosphoprot  (139 aa)
 initn: 767 init1: 767 opt: 767  Z-score: 769.8  bits: 149.3 E(85289): 3.8e-36
Smith-Waterman score: 767; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB9 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
NP_001 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVTM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
                                                                   
NP_001 VWDHRDHVNNSLFQIVMLS                                         
              130                                                  




285 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:49:06 2016 done: Fri Nov  4 09:49:07 2016
 Total Scan time:  5.710 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]