FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9913, 285 aa
  1>>>pF1KB9913 285 - 285 aa - 285 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2336+/-0.000755; mu= 12.2264+/- 0.046
 mean_var=99.8552+/-20.018, 0's: 0 Z-trim(111.4): 10  B-trim: 479 in 1/52
 Lambda= 0.128348
 statistics sampled from 12375 (12378) to 12375 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.38), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS41941.1 EAPP gene_id:55837|Hs108|chr14         ( 285) 1918 364.9 3.8e-101


>>CCDS41941.1 EAPP gene_id:55837|Hs108|chr14              (285 aa)
 initn: 1918 init1: 1918 opt: 1918  Z-score: 1929.4  bits: 364.9 E(32554): 3.8e-101
Smith-Waterman score: 1918; 100.0% identity (100.0% similar) in 285 aa overlap (1-285:1-285)

               10        20        30        40        50        60
pF1KB9 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MNRLPDDYDPYAVEEPSDEEPALSSSEDEVDVLLHGTPDQKRKLIRECLTGESESSSEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FEKEMEAELNSTMKTMEDKLSSLGTGSSSGNGKVATAPTRYYDDIYFDSDSEDEDRAVQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TKKKKKKQHKIPTNDELLYDPEKDNRDQAWVDAQRRGYHGLGPQRSRQQQPVPNSDAVLN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CPACMTTLCLDCQRHESYKTQYRAMFVMNCSINKEEVLRYKASENRKKRRVHKKMRSNRE
              190       200       210       220       230       240

              250       260       270       280     
pF1KB9 DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DAAEKAETDVEEIYHPVMCTECSTEVAVYDKDEVFHFFNVLASHS
              250       260       270       280     




285 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 09:49:05 2016 done: Fri Nov  4 09:49:06 2016
 Total Scan time:  2.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]