Result of FASTA (ccds) for
pF1KB9904
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9904, 589 aa
1>>>pF1KB9904 589 - 589 aa - 589 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4642+/-0.00105; mu= 3.8294+/- 0.064
mean_var=342.3760+/-69.843, 0's: 0 Z-trim(115.0): 22 B-trim: 953 in 1/50
Lambda= 0.069314
statistics sampled from 15573 (15595) to 15573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.479), width: 16
Scan time: 3.700
The best scores are: opt bits E(32554)
CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19 ( 589) 4115 425.4 1e-118
CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19 ( 456) 3200 333.8 3e-91
CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2 ( 537) 1025 116.3 9.8e-26
CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2 ( 542) 1025 116.3 9.9e-26
>>CCDS33015.1 HNRNPL gene_id:3191|Hs108|chr19 (589 aa)
initn: 4115 init1: 4115 opt: 4115 Z-score: 2245.0 bits: 425.4 E(32554): 1e-118
Smith-Waterman score: 4115; 100.0% identity (100.0% similar) in 589 aa overlap (1-589:1-589)
10 20 30 40 50 60
pF1KB9 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
490 500 510 520 530 540
550 560 570 580
pF1KB9 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
550 560 570 580
>>CCDS33016.1 HNRNPL gene_id:3191|Hs108|chr19 (456 aa)
initn: 3200 init1: 3200 opt: 3200 Z-score: 1751.8 bits: 333.8 E(32554): 3e-91
Smith-Waterman score: 3200; 100.0% identity (100.0% similar) in 456 aa overlap (134-589:1-456)
110 120 130 140 150 160
pF1KB9 VHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIY
::::::::::::::::::::::::::::::
CCDS33 MPKKRQALVEFEDVLGACNAVNYAADNQIY
10 20 30
170 180 190 200 210 220
pF1KB9 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQR
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB9 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTW
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB9 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB9 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVF
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB9 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQ
280 290 300 310 320 330
470 480 490 500 510 520
pF1KB9 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE
340 350 360 370 380 390
530 540 550 560 570 580
pF1KB9 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFS
400 410 420 430 440 450
pF1KB9 TAQHAS
::::::
CCDS33 TAQHAS
>>CCDS46261.1 HNRNPLL gene_id:92906|Hs108|chr2 (537 aa)
initn: 1767 init1: 934 opt: 1025 Z-score: 575.5 bits: 116.3 E(32554): 9.8e-26
Smith-Waterman score: 1884; 57.1% identity (76.7% similar) in 520 aa overlap (71-587:44-536)
50 60 70 80 90 100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
::: ::::: . . .:: . ::. .
CCDS46 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
20 30 40 50 60
110 120 130 140 150 160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
:::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
CCDS46 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
70 80 90 100 110 120
170 180 190 200 210 220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
.::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: :
CCDS46 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
130 140 150 160 170 180
230 240 250 260 270 280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
:::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::.
CCDS46 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
190 200 210 220 230 240
290 300 310 320 330 340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
:.::::.: : :. : :.. :::: .::.::. . : :: :: :: :
CCDS46 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
250 260 270 280 290
350 360 370 380 390
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
::: :: :. : : : : . .. :.:: :: : ::::.:
CCDS46 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
300 310 320 330 340
400 410 420 430 440 450
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
:::.::::::.:::::::. ::.:.:::.: :::.::.::::: .::..:::::::: .
CCDS46 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
350 360 370 380 390 400
460 470 480 490 500 510
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
..:.: . ::::. :::::. :.::::.. ::.:: :: :: :::..:.:: ::::.:
CCDS46 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
410 420 430 440 450 460
520 530 540 550 560 570
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
..:.. : . :::..: : .. ::::::: :.::.:.: :::::.. ::: :::
CCDS46 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT
470 480 490 500 510 520
580
pF1KB9 LKLCFSTAQHAS
:::::::..:
CCDS46 LKLCFSTSSHL
530
>>CCDS1796.2 HNRNPLL gene_id:92906|Hs108|chr2 (542 aa)
initn: 1767 init1: 934 opt: 1025 Z-score: 575.4 bits: 116.3 E(32554): 9.9e-26
Smith-Waterman score: 1884; 57.1% identity (76.7% similar) in 520 aa overlap (71-587:49-541)
50 60 70 80 90 100
pF1KB9 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA
::: ::::: . . .:: . ::. .
CCDS17 ESQAKRLKTEEGEIDYSAEEGENRREATPRGGGDGGGGGRSFSQPEAGGSH----HKVSV
20 30 40 50 60 70
110 120 130 140 150 160
pF1KB9 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADN
:::::.::: ..::::::::::..:: : ::..:: :::::::::.. .: . :..:::.
CCDS17 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADE
80 90 100 110 120 130
170 180 190 200 210 220
pF1KB9 QIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGP
.::::. :: :::::..:.:::..:: . :.:::..: ::.: ::.:::::.::: :
CCDS17 PVYIAGQQAFFNYSTSKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGK
140 150 160 170 180 190
230 240 250 260 270 280
pF1KB9 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQ
:::::::..::.::::::.:: ::.:::.:::::::.::::::::::.::::::..::.
CCDS17 VQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLNVIRNDN
200 210 220 230 240 250
290 300 310 320 330 340
pF1KB9 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHY
:.::::.: : :. : :.. :::: .::.::. . : :: :: :: :
CCDS17 DSWDYTKPYL-GRRDRGKG---RQRQA-ILGEHPSSFR--HDGYGSH------GPLLPLP
260 270 280 290 300
350 360 370 380 390
pF1KB9 EGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEY--GPHADSPVLMVYGLDQSKMNCDR
::: :: :. : : : : . .. :.:: :: : ::::.:
CCDS17 SRYRMG----------SRDTPELVAYPLPQASSSYMHGGNPSGSVVMVSGLHQLKMNCSR
310 320 330 340 350
400 410 420 430 440 450
pF1KB9 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPA
:::.::::::.:::::::. ::.:.:::.: :::.::.::::: .::..:::::::: .
CCDS17 VFNLFCLYGNIEKVKFMKTIPGTALVEMGDEYAVERAVTHLNNVKLFGKRLNVCVSKQHS
360 370 380 390 400 410
460 470 480 490 500 510
pF1KB9 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFF
..:.: . ::::. :::::. :.::::.. ::.:: :: :: :::..:.:: ::::.:
CCDS17 VVPSQIFELEDGTSSYKDFAMSKNNRFTSAGQASKNIIQPPSCVLHYYNVPLCVTEETFT
420 430 440 450 460 470
520 530 540 550 560 570
pF1KB9 EICDELGVKRPSSVKVFSGK-SERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYT
..:.. : . :::..: : .. ::::::: :.::.:.: :::::.. ::: :::
CCDS17 KLCNDHEVLTFIKYKVFDAKPSAKTLSGLLEWECKTDAVEALTALNHYQIRVPNGSNPYT
480 490 500 510 520 530
580
pF1KB9 LKLCFSTAQHAS
:::::::..:
CCDS17 LKLCFSTSSHL
540
589 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:27:03 2016 done: Sat Nov 5 21:27:04 2016
Total Scan time: 3.700 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]