Result of FASTA (ccds) for
pF1KB9900
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9900, 374 aa
1>>>pF1KB9900 374 - 374 aa - 374 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3716+/-0.000667; mu= 17.1666+/- 0.040
mean_var=77.0184+/-15.678, 0's: 0 Z-trim(111.6): 15 B-trim: 35 in 1/49
Lambda= 0.146143
statistics sampled from 12482 (12494) to 12482 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.384), width: 16
Scan time: 2.630
The best scores are: opt bits E(32554)
CCDS12154.1 FUT5 gene_id:2527|Hs108|chr19 ( 374) 2671 572.1 2.7e-163
CCDS12153.1 FUT3 gene_id:2525|Hs108|chr19 ( 361) 2039 438.9 3.4e-123
CCDS12152.1 FUT6 gene_id:2528|Hs108|chr19 ( 359) 2029 436.8 1.5e-122
CCDS7022.1 FUT7 gene_id:2529|Hs108|chr9 ( 342) 950 209.2 4.3e-54
CCDS5033.1 FUT9 gene_id:10690|Hs108|chr6 ( 359) 872 192.8 3.9e-49
CCDS8301.1 FUT4 gene_id:2526|Hs108|chr11 ( 530) 845 187.2 2.8e-47
>>CCDS12154.1 FUT5 gene_id:2527|Hs108|chr19 (374 aa)
initn: 2671 init1: 2671 opt: 2671 Z-score: 3045.2 bits: 572.1 E(32554): 2.7e-163
Smith-Waterman score: 2671; 99.7% identity (100.0% similar) in 374 aa overlap (1-374:1-374)
10 20 30 40 50 60
pF1KB9 MDPLGPAKPQWLWRRCLAGLLFQLLVAVCFFSYLRVSRDDATGSPRPGLMAVEPVTGAPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDPLGPAKPQWLWRRCLAGLLFQLLVAVCFFSYLRVSRDDATGSPRPGLMAVEPVTGAPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GSRCQDSMATPAHPTLLILLWTWPFNTPVALPRCSEMVPGAADCNITADSSVYPQADAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSRCQDSMATPAHPTLLILLWTWPFNTPVALPRCSEMVPGAADCNITADSSVYPQADAVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 VHHWDIMYNPSANLPPPTRPQGQRWIWFSMESPSNCRHLEALDGYFNLTMSYRSDSDIFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VHHWDIMYNPSANLPPPTRPQGQRWIWFSMESPSNCRHLEALDGYFNLTMSYRSDSDIFT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 PYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGRSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGRSHK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 DAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQQE
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
CCDS12 DAFIHVDDFQSPKDLARYLQELDKDHARYLSYFHWRETLRPRSFSWALAFCKACWKLQQE
310 320 330 340 350 360
370
pF1KB9 SRYQTVRSIAAWFT
::::::::::::::
CCDS12 SRYQTVRSIAAWFT
370
>>CCDS12153.1 FUT3 gene_id:2525|Hs108|chr19 (361 aa)
initn: 2303 init1: 2012 opt: 2039 Z-score: 2325.2 bits: 438.9 E(32554): 3.4e-123
Smith-Waterman score: 2312; 88.2% identity (92.0% similar) in 374 aa overlap (1-374:1-361)
10 20 30 40 50 60
pF1KB9 MDPLGPAKPQWLWRRCLAGLLFQLLVAVCFFSYLRVSRDDATGSPRPGLMAVEPVTGAPN
::::: ::::: ::::::.::::::::::::::::::::::::::: ::.
CCDS12 MDPLGAAKPQWPWRRCLAALLFQLLVAVCFFSYLRVSRDDATGSPR-----------APS
10 20 30 40
70 80 90 100 110 120
pF1KB9 GSRCQDSMATPAHPTLLILLWTWPFNTPVALPRCSEMVPGAADCNITADSSVYPQADAVI
:: ::. ::..::::::: ::::. :::: ::::::::.:::.:::: .:::::: ::
CCDS12 GSSRQDT--TPTRPTLLILLRTWPFHIPVALSRCSEMVPGTADCHITADRKVYPQADMVI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 VHHWDIMYNPSANLPPPTRPQGQRWIWFSMESPSNCRHLEALDGYFNLTMSYRSDSDIFT
::::::: ::.. ::: ::::::::::..: : ::.:::::: ::::::::::::::::
CCDS12 VHHWDIMSNPKSRLPPSPRPQGQRWIWFNLEPPPNCQHLEALDRYFNLTMSYRSDSDIFT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 PYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGRSHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGRSHK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 PLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 DAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQQE
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS12 DAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALDFCKACWKLQQE
290 300 310 320 330 340
370
pF1KB9 SRYQTVRSIAAWFT
::::::::::::::
CCDS12 SRYQTVRSIAAWFT
350 360
>>CCDS12152.1 FUT6 gene_id:2528|Hs108|chr19 (359 aa)
initn: 1991 init1: 1991 opt: 2029 Z-score: 2313.9 bits: 436.8 E(32554): 1.5e-122
Smith-Waterman score: 2239; 85.8% identity (90.6% similar) in 374 aa overlap (1-374:1-359)
10 20 30 40 50 60
pF1KB9 MDPLGPAKPQWLWRRCLAGLLFQLLVAVCFFSYLRVSRDDATGSPRPGLMAVEPVTGAPN
::::::::::: :: ::. ::::::.:::::::::::.:: : : ::
CCDS12 MDPLGPAKPQWSWRCCLTTLLFQLLMAVCFFSYLRVSQDD------P--------TVYPN
10 20 30 40
70 80 90 100 110 120
pF1KB9 GSRCQDSMATPAHPTLLILLWTWPFNTPVALPRCSEMVPGAADCNITADSSVYPQADAVI
::: :: .:::: :::::::::: :.:::::::::::.:::::::: .:::::::::
CCDS12 GSRFPDSTGTPAHSIPLILLWTWPFNKPIALPRCSEMVPGTADCNITADRKVYPQADAVI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 VHHWDIMYNPSANLPPPTRPQGQRWIWFSMESPSNCRHLEALDGYFNLTMSYRSDSDIFT
::: ..::::::.:: : ::::::::::::::.: .:.:.::::::::::::::::::
CCDS12 VHHREVMYNPSAQLPRSPRRQGQRWIWFSMESPSHCWQLKAMDGYFNLTMSYRSDSDIFT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 PYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGRSHK
::::::::::::::::::::::::::::::::: :.::::::::::::::::::::::::
CCDS12 PYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWGPNSARVRYYQSLQAHLKVDVYGRSHK
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 PLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PLPQGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYERFLPP
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 DAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS12 DAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLRPRSFSWALAFCKACWKLQEE
290 300 310 320 330 340
370
pF1KB9 SRYQTVRSIAAWFT
::::: :.::::::
CCDS12 SRYQT-RGIAAWFT
350
>>CCDS7022.1 FUT7 gene_id:2529|Hs108|chr9 (342 aa)
initn: 640 init1: 336 opt: 950 Z-score: 1084.7 bits: 209.2 E(32554): 4.3e-54
Smith-Waterman score: 950; 47.6% identity (70.9% similar) in 309 aa overlap (70-373:40-340)
40 50 60 70 80 90
pF1KB9 DATGSPRPGLMAVEPVTGAPNGSRCQDSMATPA-HPTLLILLWTWPF-NTPVALPRCSEM
::: .::. ::.: ::: . : :: .
CCDS70 RRLRGLGVLAGVALLAALWLLWLLGSAPRGTPAPQPTITILVWHWPFTDQPPELPSDTCT
10 20 30 40 50 60
100 110 120 130 140 150
pF1KB9 VPGAADCNITADSSVYPQADAVIVHHWDIMYNPSANLPPPTRPQGQRWIWFSMESPSNCR
: : :...:. :. .::::. :: ... : .:: ::.:: :.: ::::::. .
CCDS70 RYGIARCHLSANRSLLASADAVVFHHRELQTRRS-HLPLAQRPRGQPWVWASMESPSHTH
70 80 90 100 110 120
160 170 180 190 200 210
pF1KB9 HLEALDGYFNLTMSYRSDSDIFTPYGWLEP-WSGQPAHPPLNLSAKTELVAWAVSNWKPD
: : : :: ..::: :::::.::: ::: :. :. ::: ::....::.:::..
CCDS70 GLSHLRGIFNWVLSYRRDSDIFVPYGRLEPHWG--PS-PPL--PAKSRVAAWVVSNFQER
130 140 150 160 170 180
220 230 240 250 260 270
pF1KB9 SARVRYYQSLQAHLKVDVYGRSH-KPLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWR
. :.: :..: ::.:::.::.. .:: . .. :...:.:::.:::: : ::::::.::
CCDS70 QLRARLYRQLAPHLRVDVFGRANGRPLCASCLVPTVAQYRFYLSFENSQHRDYITEKFWR
190 200 210 220 230 240
280 290 300 310 320 330
pF1KB9 NALEAWAVPVVLGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRW
::: : .::::::: :..:: :.: :::.::::: : ..:: .: ... .:: .: :
CCDS70 NALVAGTVPVVLGPPRATYEAFVPADAFVHVDDFGSARELAAFLTGMNE--SRYQRFFAW
250 260 270 280 290 300
340 350 360 370
pF1KB9 RETLRPRSFS-WALAFCKACWKLQQESRYQTVRSIAAWFT
:. :: : :. : :: : . . : :. ... .::
CCDS70 RDRLRVRLFTDWRERFCAICDRYPHLPRSQVYEDLEGWFQA
310 320 330 340
>>CCDS5033.1 FUT9 gene_id:10690|Hs108|chr6 (359 aa)
initn: 742 init1: 355 opt: 872 Z-score: 995.5 bits: 192.8 E(32554): 3.9e-49
Smith-Waterman score: 872; 44.0% identity (72.7% similar) in 300 aa overlap (78-373:66-357)
50 60 70 80 90 100
pF1KB9 GLMAVEPVTGAPNGSRCQDSMATPAHPTLLILLWTWPFNTPVALPRCSEMVPGAADCNIT
::.:.:::. : :. : . :..:
CCDS50 WIFSPMESASSVLKMKNFFSTKTDYFNETTILVWVWPFGQTFDLTSCQAMF-NIQGCHLT
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB9 ADSSVYPQADAVIVHHWDIMYNPSANLPPPTRPQGQRWIWFSMESPSNCRHLEALDGYFN
.: :.: .. ::..:: :: .. . ::: .:: :.:::...:::.. . ... ::
CCDS50 TDRSLYNKSHAVLIHHRDISWDLT-NLPQQARPPFQKWIWMNLESPTHTPQKSGIEHLFN
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB9 LTMSYRSDSDIFTPYGWLEPWSGQPAHPPLNLSAKTELVAWAVSNWKPDSARVRYYQSLQ
::..:: :::: .:::.: : .: ... .: .:: :.::::.:. :::.::. :.
CCDS50 LTLTYRRDSDIQVPYGFLTV-STNPF--VFEVPSKEKLVCWVVSNWNPEHARVKYYNELS
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB9 AHLKVDVYGRSH-KPLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVV
... .::.. . . ... :.: ::::.::::.: :::::::. ::. : .::::
CCDS50 KSIEIHTYGQAFGEYVNDKNLIPTISTCKFYLSFENSIHKDYITEKLY-NAFLAGSVPVV
220 230 240 250 260
290 300 310 320 330 340
pF1KB9 LGPSRSNYERFLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRETLR---PRS
::::: ::: ..: :.::::.:..::..::.::.:.::.. ::::: ::. . ::
CCDS50 LGPSRENYENYIPADSFIHVEDYNSPSELAKYLKEVDKNNKLYLSYFNWRKDFTVNLPR-
270 280 290 300 310 320
350 360 370
pF1KB9 FSWALAFCKACWKLQQESRYQTVRSIAAWFT
: : : :: .......:..: .. ::
CCDS50 F-WESHACLACDHVKRHQEYKSVGNLEKWFWN
330 340 350
>>CCDS8301.1 FUT4 gene_id:2526|Hs108|chr11 (530 aa)
initn: 844 init1: 401 opt: 845 Z-score: 962.4 bits: 187.2 E(32554): 2.8e-47
Smith-Waterman score: 907; 44.0% identity (66.3% similar) in 350 aa overlap (70-373:184-528)
40 50 60 70 80 90
pF1KB9 DATGSPRPGLMAVEPVTGAPNGSRCQDSMATPAHPTLLILLWTWPF----NTPVALPRCS
::..: . .::: :: ..: : :
CCDS83 CVLAAAGLTCTALITYACWGQLPPLPWASPTPSRP-VGVLLWWEPFGGRDSAPRPPPDC-
160 170 180 190 200 210
100 110 120 130
pF1KB9 EMVPGAADCNITADSSVYPQADAVIVHHWDIMYNPSANLPPP------------------
.. . . : . .: . : .:.::. :: :.. .: . :::
CCDS83 RLRFNISGCRLLTDRASYGEAQAVLFHHRDLVKGPP-DWPPPWGIQAHTAEEVDLRVLDY
220 230 240 250 260 270
140 150 160 170 180
pF1KB9 --------------TRPQGQRWIWFSMESPSNCRHLEAL-DGYFNLTMSYRSDSDIFTPY
:: ::::.:...::::. :..: .. :: :.:::.:::.:.::
CCDS83 EEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPY
280 290 300 310 320 330
190 200 210 220 230
pF1KB9 GWLEPWSGQPAHPPLNL----SAKTELVAWAVSNWKPDSARVRYYQSLQAHLKVDVYGRS
:.: : : .:. :: .: : : ::::.::.: .::::::..:. :. :::.::.
CCDS83 GYLYPRS-HPGDPPSGLAPPLSRKQGLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRG
340 350 360 370 380
240 250 260 270 280 290
pF1KB9 H--KPLPKGTMMETLSRYKFYLAFENSLHPDYITEKLWRNALEAWAVPVVLGPSRSNYER
.:.:. ...:..::::::::::: : :::::::::::: : ::::::::.:.::::
CCDS83 GPGQPVPEIGLLHTVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVLGPDRANYER
390 400 410 420 430 440
300 310 320 330 340 350
pF1KB9 FLPPDAFIHVDDFQSPKDLARYLQELDKDHARYLSYFRWRET--LRPRSFSWALAFCKAC
:.: :::::::: : ..:: :: ::.. : : ::.::.. .. :: : .:..:
CCDS83 FVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSF-WDEPWCRVC
450 460 470 480 490 500
360 370
pF1KB9 WKLQQES-RYQTVRSIAAWFT
.:. . : ...:..:.::
CCDS83 QAVQRAGDRPKSIRNLASWFER
510 520 530
374 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:49:33 2016 done: Mon Nov 7 04:49:34 2016
Total Scan time: 2.630 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]