FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9881, 599 aa
  1>>>pF1KB9881 599 - 599 aa - 599 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9797+/-0.00105; mu= -1.2629+/- 0.063
 mean_var=314.4265+/-61.495, 0's: 0 Z-trim(113.7): 65  B-trim: 0 in 0/54
 Lambda= 0.072329
 statistics sampled from 14300 (14355) to 14300 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.441), width:  16
 Scan time:  4.490

The best scores are:                                      opt bits E(32554)
CCDS13064.1 CENPB gene_id:1059|Hs108|chr20         ( 599) 3961 427.3 2.8e-119


>>CCDS13064.1 CENPB gene_id:1059|Hs108|chr20              (599 aa)
 initn: 3961 init1: 3961 opt: 3961  Z-score: 2254.9  bits: 427.3 E(32554): 2.8e-119
Smith-Waterman score: 3961; 100.0% identity (100.0% similar) in 599 aa overlap (1-599:1-599)

               10        20        30        40        50        60
pF1KB9 MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGPKRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKRAILASERKYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 VASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VASTCRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMDDFTASN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GWLDRFRRRHGVVSCSGVARARARNAAPRTPAAPASPAAVPSEGSGGSTTGWRAREEQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GWLDRFRRRHGVVSCSGVARARARNAAPRTPAAPASPAAVPSEGSGGSTTGWRAREEQPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SVAEGYASQDVFSATETSLWYDFLPDQAAGLCGGDGRPRQATQRLSVLLCANADGSEKLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SVAEGYASQDVFSATETSLWYDFLPDQAAGLCGGDGRPRQATQRLSVLLCANADGSEKLP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PLVAGKSAKPRAGQAGLPCDYTANSKGGVTTQALAKYLKALDTRMAAESRRVLLLAGRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PLVAGKSAKPRAGQAGLPCDYTANSKGGVTTQALAKYLKALDTRMAAESRRVLLLAGRLA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 AQSLDTSGLRHVQLAFFPPGTVHPLERGVVQQVKGHYRQAMLLKAMAALEGQDPSGLQLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQSLDTSGLRHVQLAFFPPGTVHPLERGVVQQVKGHYRQAMLLKAMAALEGQDPSGLQLG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 LTEALHFVAAAWQAVEPSDIAACFREAGFGGGPNATITTSLKSEGEEEEEEEEEEEEEEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LTEALHFVAAAWQAVEPSDIAACFREAGFGGGPNATITTSLKSEGEEEEEEEEEEEEEEG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 EGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSEGLEAEDWAQGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSEGLEAEDWAQGV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 VEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVP
              490       500       510       520       530       540

              550       560       570       580       590         
pF1KB9 VPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKNHARQAGVRGLGHQS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VPSFGEAMAYFAMVKRYLTSFPIDDRVQSHILHLEHDLVHVTRKNHARQAGVRGLGHQS
              550       560       570       580       590         




599 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:18:36 2016 done: Fri Nov  4 20:18:37 2016
 Total Scan time:  4.490 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]