Result of FASTA (omim) for
pF1KB9875
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9875, 527 aa
1>>>pF1KB9875 527 - 527 aa - 527 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6526+/-0.000377; mu= 16.7835+/- 0.023
mean_var=83.6629+/-15.964, 0's: 0 Z-trim(113.6): 41 B-trim: 52 in 1/52
Lambda= 0.140219
statistics sampled from 23055 (23086) to 23055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.641), E-opt: 0.2 (0.271), width: 16
Scan time: 8.770
The best scores are: opt bits E(85289)
NP_001230715 (OMIM: 179616,233650,601457,603554) V ( 527) 3643 747.2 2.8e-215
NP_001230714 (OMIM: 179616,233650,601457,603554) V ( 527) 3643 747.2 2.8e-215
NP_000527 (OMIM: 179616,233650,601457,603554) V(D) ( 527) 3643 747.2 2.8e-215
>>NP_001230715 (OMIM: 179616,233650,601457,603554) V(D)J (527 aa)
initn: 3643 init1: 3643 opt: 3643 Z-score: 3985.9 bits: 747.2 E(85289): 2.8e-215
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
430 440 450 460 470 480
490 500 510 520
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
490 500 510 520
>>NP_001230714 (OMIM: 179616,233650,601457,603554) V(D)J (527 aa)
initn: 3643 init1: 3643 opt: 3643 Z-score: 3985.9 bits: 747.2 E(85289): 2.8e-215
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
430 440 450 460 470 480
490 500 510 520
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
490 500 510 520
>>NP_000527 (OMIM: 179616,233650,601457,603554) V(D)J re (527 aa)
initn: 3643 init1: 3643 opt: 3643 Z-score: 3985.9 bits: 747.2 E(85289): 2.8e-215
Smith-Waterman score: 3643; 100.0% identity (100.0% similar) in 527 aa overlap (1-527:1-527)
10 20 30 40 50 60
pF1KB9 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IFSKDSCYLPPLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TFRCTEKDLVGDVPEARYGHSINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CVFLVDFEFGCATSYILPELQDGLSFHVSIAKNDTIYILGGHSLANNIRPANLYRIRVDL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMICNIISLEDNKIEIR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKCAEDDTNEEQT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNE
430 440 450 460 470 480
490 500 510 520
pF1KB9 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
:::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HVEIARALHTPQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD
490 500 510 520
527 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:57:09 2016 done: Fri Nov 4 19:57:10 2016
Total Scan time: 8.770 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]