FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9859, 400 aa
  1>>>pF1KB9859 400 - 400 aa - 400 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5238+/-0.000428; mu= -9.8862+/- 0.027
 mean_var=529.3445+/-104.598, 0's: 0 Z-trim(124.9): 49  B-trim: 0 in 0/62
 Lambda= 0.055745
 statistics sampled from 47540 (47607) to 47540 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.558), width:  16
 Scan time: 10.570

The best scores are:                                      opt bits E(85289)
NP_031376 (OMIM: 605335) pleckstrin homology-like  ( 401) 2907 248.0   3e-65


>>NP_031376 (OMIM: 605335) pleckstrin homology-like doma  (401 aa)
 initn: 4638 init1: 1622 opt: 2907  Z-score: 1292.3  bits: 248.0 E(85289): 3e-65
Smith-Waterman score: 2907; 99.5% identity (99.5% similar) in 401 aa overlap (1-400:1-401)

               10        20        30        40        50        60
pF1KB9 MRRAPAAERLLELGFSPRCGRQEPPFPLGVTRGWGRWPIQKRREGARPVPFSERSQEDGR
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
NP_031 MRRAPAAERLLELGFPPRCGRQEPPFPLGVTRGWGRWPIQKRREGARPVPFSERSQEDGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GPAARSSGTLWRIRTRLSLCRDPEPPPPLCLLRVSLLCALRAGGRGSRWGEDGARLLLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 GPAARSSGTLWRIRTRLSLCRDPEPPPPLCLLRVSLLCALRAGGRGSRWGEDGARLLLLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PARAAGNGEAEPSGGPSYAGRMLESSGCKALKEGVLEKRSDGLLQLWKKKCCILTEEGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 PARAAGNGEAEPSGGPSYAGRMLESSGCKALKEGVLEKRSDGLLQLWKKKCCILTEEGLL
              130       140       150       160       170       180

              190       200        210       220       230         
pF1KB9 LIPPKQLQHQQQQQQQQQQQQQQ-PGQGPAEPSQPSGPAVASLEPPVKLKELHFSNMKTV
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
NP_031 LIPPKQLQHQQQQQQQQQQQQQQQPGQGPAEPSQPSGPAVASLEPPVKLKELHFSNMKTV
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB9 DCVERKGKYMYFTVVMAEGKEIDFRCPQDQGWNAEITLQMVQYKNRQAILAVKSTRQKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 DCVERKGKYMYFTVVMAEGKEIDFRCPQDQGWNAEITLQMVQYKNRQAILAVKSTRQKQQ
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB9 HLVQQQPPSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_031 HLVQQQPPSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHS
              310       320       330       340       350       360

     360       370       380       390       400
pF1KB9 HPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLRSTSNSA
       :::::::::::::::::::::::::::::::::::::::::
NP_031 HPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLRSTSNSA
              370       380       390       400 




400 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:01:09 2016 done: Sat Nov  5 21:01:11 2016
 Total Scan time: 10.570 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]