FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9859, 400 aa
  1>>>pF1KB9859 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5696+/-0.000993; mu= 1.4315+/- 0.060
 mean_var=424.3871+/-83.489, 0's: 0 Z-trim(117.0): 53  B-trim: 66 in 1/54
 Lambda= 0.062258
 statistics sampled from 17632 (17677) to 17632 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.543), width:  16
 Scan time:  3.580

The best scores are:                                      opt bits E(32554)
CCDS31861.1 PHLDA1 gene_id:22822|Hs108|chr12       ( 401) 2907 274.8 9.7e-74


>>CCDS31861.1 PHLDA1 gene_id:22822|Hs108|chr12            (401 aa)
 initn: 4638 init1: 1622 opt: 2907  Z-score: 1437.3  bits: 274.8 E(32554): 9.7e-74
Smith-Waterman score: 2907; 99.5% identity (99.5% similar) in 401 aa overlap (1-400:1-401)

               10        20        30        40        50        60
pF1KB9 MRRAPAAERLLELGFSPRCGRQEPPFPLGVTRGWGRWPIQKRREGARPVPFSERSQEDGR
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MRRAPAAERLLELGFPPRCGRQEPPFPLGVTRGWGRWPIQKRREGARPVPFSERSQEDGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GPAARSSGTLWRIRTRLSLCRDPEPPPPLCLLRVSLLCALRAGGRGSRWGEDGARLLLLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPAARSSGTLWRIRTRLSLCRDPEPPPPLCLLRVSLLCALRAGGRGSRWGEDGARLLLLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PARAAGNGEAEPSGGPSYAGRMLESSGCKALKEGVLEKRSDGLLQLWKKKCCILTEEGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PARAAGNGEAEPSGGPSYAGRMLESSGCKALKEGVLEKRSDGLLQLWKKKCCILTEEGLL
              130       140       150       160       170       180

              190       200        210       220       230         
pF1KB9 LIPPKQLQHQQQQQQQQQQQQQQ-PGQGPAEPSQPSGPAVASLEPPVKLKELHFSNMKTV
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
CCDS31 LIPPKQLQHQQQQQQQQQQQQQQQPGQGPAEPSQPSGPAVASLEPPVKLKELHFSNMKTV
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB9 DCVERKGKYMYFTVVMAEGKEIDFRCPQDQGWNAEITLQMVQYKNRQAILAVKSTRQKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DCVERKGKYMYFTVVMAEGKEIDFRCPQDQGWNAEITLQMVQYKNRQAILAVKSTRQKQQ
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB9 HLVQQQPPSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HLVQQQPPSQPQPQPQLQPQPQPQPQPQPQPQSQPQPQPQPKPQPQQLHPYPHPHPHPHS
              310       320       330       340       350       360

     360       370       380       390       400
pF1KB9 HPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLRSTSNSA
       :::::::::::::::::::::::::::::::::::::::::
CCDS31 HPHSHPHPHPHPHPHQIPHPHPQPHSQPHGHRLLRSTSNSA
              370       380       390       400 




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:01:08 2016 done: Sat Nov  5 21:01:09 2016
 Total Scan time:  3.580 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]