FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9846, 374 aa
  1>>>pF1KB9846 374 - 374 aa - 374 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6181+/-0.000702; mu= 15.4560+/- 0.042
 mean_var=74.1654+/-14.804, 0's: 0 Z-trim(110.8): 6  B-trim: 0 in 0/50
 Lambda= 0.148927
 statistics sampled from 11909 (11912) to 11909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.366), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS7857.1 FANCF gene_id:2188|Hs108|chr11          ( 374) 2524 551.2 5.4e-157


>>CCDS7857.1 FANCF gene_id:2188|Hs108|chr11               (374 aa)
 initn: 2524 init1: 2524 opt: 2524  Z-score: 2932.1  bits: 551.2 E(32554): 5.4e-157
Smith-Waterman score: 2524; 100.0% identity (100.0% similar) in 374 aa overlap (1-374:1-374)

               10        20        30        40        50        60
pF1KB9 MESLLQHLDRFSELLAVSSTTYVSTWDPATVRRALQWARYLRHIHRRFGRHGPIRTALER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MESLLQHLDRFSELLAVSSTTYVSTWDPATVRRALQWARYLRHIHRRFGRHGPIRTALER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RLHNQWRQEGGFGRGPVPGLANFQALGHCDVLLSLRLLENRALGDAARYHLVQQLFPGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RLHNQWRQEGGFGRGPVPGLANFQALGHCDVLLSLRLLENRALGDAARYHLVQQLFPGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 VRDADEETLQESLARLARRRSAVHMLRFNGYRENPNLQEDSLMKTQAELLLERLQEVGKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 VRDADEETLQESLARLARRRSAVHMLRFNGYRENPNLQEDSLMKTQAELLLERLQEVGKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 EAERPARFLSSLWERLPQNNFLKVIAVALLQPPLSRRPQEELEPGIHKSPGEGSQVLVHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EAERPARFLSSLWERLPQNNFLKVIAVALLQPPLSRRPQEELEPGIHKSPGEGSQVLVHW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 LLGNSEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYDLQKGIWVGTESQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LLGNSEVFAAFCRALPAGLLTLVTSRHPALSPVYLGLLTDWGQRLHYDLQKGIWVGTESQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 DVPWEELHNRFQSLCQAPPPLKDKVLTALETCKAQDGDFEVPGLSIWTDLLLALRSGAFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DVPWEELHNRFQSLCQAPPPLKDKVLTALETCKAQDGDFEVPGLSIWTDLLLALRSGAFR
              310       320       330       340       350       360

              370    
pF1KB9 KRQVLGLSAGLSSV
       ::::::::::::::
CCDS78 KRQVLGLSAGLSSV
              370    




374 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:42:35 2016 done: Fri Nov  4 19:42:35 2016
 Total Scan time:  3.040 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]