Result of FASTA (omim) for
pF1KB9838
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9838, 352 aa
1>>>pF1KB9838 352 - 352 aa - 352 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5116+/-0.000363; mu= 0.3681+/- 0.023
mean_var=329.2879+/-66.431, 0's: 0 Z-trim(124.4): 33 B-trim: 92 in 1/58
Lambda= 0.070678
statistics sampled from 45873 (45909) to 45873 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.538), width: 16
Scan time: 9.000
The best scores are: opt bits E(85289)
NP_963883 (OMIM: 610303) transcription factor MafA ( 353) 2473 265.1 1.7e-70
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 616 75.8 1.8e-13
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383) 616 75.8 1.8e-13
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383) 616 75.8 1.8e-13
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383) 616 75.8 1.8e-13
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 616 75.8 1.8e-13
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 576 71.6 2.7e-12
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237) 456 59.2 1.1e-08
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237) 456 59.2 1.1e-08
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 456 59.2 1.1e-08
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237) 456 59.2 1.1e-08
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237) 456 59.2 1.1e-08
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237) 456 59.2 1.1e-08
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237) 456 59.2 1.1e-08
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339) 456 59.4 1.3e-08
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132) 426 55.9 5.9e-08
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234) 426 56.2 8.7e-08
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156) 346 47.8 1.9e-05
NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 346 47.8 1.9e-05
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156) 346 47.8 1.9e-05
NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 344 47.6 2.2e-05
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162) 344 47.6 2.2e-05
NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 344 47.6 2.2e-05
NP_001155044 (OMIM: 604877) transcription factor M ( 164) 310 44.2 0.00025
NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 310 44.2 0.00025
NP_001155045 (OMIM: 604877) transcription factor M ( 164) 310 44.2 0.00025
NP_001155046 (OMIM: 604877) transcription factor M ( 135) 290 42.0 0.0009
NP_004566 (OMIM: 113725) POU domain, class 4, tran ( 409) 271 40.6 0.0072
>>NP_963883 (OMIM: 610303) transcription factor MafA [Ho (353 aa)
initn: 1873 init1: 1533 opt: 2473 Z-score: 1386.7 bits: 265.1 E(85289): 1.7e-70
Smith-Waterman score: 2473; 99.7% identity (99.7% similar) in 353 aa overlap (1-352:1-353)
10 20 30 40 50 60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALEDLYWMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALEDLYWMS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 GYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGADDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 GYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGADDM
130 140 150 160 170 180
190 200 210 220 230
pF1KB9 GAGHHHGAHHAAHHHHAAHHHHHHHHH-GGAGHGGGAGHHVRLEERFSDDQLVSMSVREL
::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
NP_963 GAGHHHGAHHAAHHHHAAHHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVREL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB9 NRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 NRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB9 GRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_963 GRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
310 320 330 340 350
>>NP_001026974 (OMIM: 177075,601088,610202) transcriptio (373 aa)
initn: 767 init1: 547 opt: 616 Z-score: 363.1 bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)
10 20 30 40 50
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
NP_001 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
:::::::: :::: :::::. :: : : :::
NP_001 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
70 80 90
120 130 140 150 160 170
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
NP_001 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
100 110 120 130 140 150
180 190 200
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
::....:: :. . :: :. :::::: ::::
NP_001 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
160 170 180 190 200 210
210 220 230
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
::.: :::.: :: .....::::.:::.::
NP_001 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
NP_001 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
: :..::..::: ::::::::.. : ..... : :
NP_001 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFM
340 350 360 370
>>XP_016878722 (OMIM: 177075,601088,610202) PREDICTED: t (383 aa)
initn: 767 init1: 547 opt: 616 Z-score: 362.9 bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)
10 20 30 40 50
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
:::::::: :::: :::::. :: : : :::
XP_016 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
70 80 90
120 130 140 150 160 170
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
XP_016 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
100 110 120 130 140 150
180 190 200
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
::....:: :. . :: :. :::::: ::::
XP_016 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
160 170 180 190 200 210
210 220 230
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
::.: :::.: :: .....::::.:::.::
XP_016 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
XP_016 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
: :..::..::: ::::::::.. : ..... : :
XP_016 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFMYPRESSTSVM
340 350 360 370 380
>>XP_016878723 (OMIM: 177075,601088,610202) PREDICTED: t (383 aa)
initn: 767 init1: 547 opt: 616 Z-score: 362.9 bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)
10 20 30 40 50
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
:::::::: :::: :::::. :: : : :::
XP_016 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
70 80 90
120 130 140 150 160 170
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
XP_016 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
100 110 120 130 140 150
180 190 200
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
::....:: :. . :: :. :::::: ::::
XP_016 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
160 170 180 190 200 210
210 220 230
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
::.: :::.: :: .....::::.:::.::
XP_016 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
XP_016 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
: :..::..::: ::::::::.. : ..... : :
XP_016 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFMYPRESSTSVM
340 350 360 370 380
>>XP_016878724 (OMIM: 177075,601088,610202) PREDICTED: t (383 aa)
initn: 767 init1: 547 opt: 616 Z-score: 362.9 bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)
10 20 30 40 50
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
XP_016 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
:::::::: :::: :::::. :: : : :::
XP_016 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
70 80 90
120 130 140 150 160 170
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
XP_016 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
100 110 120 130 140 150
180 190 200
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
::....:: :. . :: :. :::::: ::::
XP_016 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
160 170 180 190 200 210
210 220 230
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
::.: :::.: :: .....::::.:::.::
XP_016 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
XP_016 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
: :..::..::: ::::::::.. : ..... : :
XP_016 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFMYPRESSTSVM
340 350 360 370 380
>>NP_005351 (OMIM: 177075,601088,610202) transcription f (403 aa)
initn: 767 init1: 547 opt: 616 Z-score: 362.6 bits: 75.8 E(85289): 1.8e-13
Smith-Waterman score: 1036; 50.0% identity (63.6% similar) in 396 aa overlap (4-334:4-369)
10 20 30 40 50
pF1KB9 MAAELAMG-AELPSSPLAIEYVNDFDLMKFEVKKEPPEAERF---CHRL-PPGSLSSTPL
::::. ..::.::::.::::::::::::::::: :..:. : :: :::::::.
NP_005 MASELAMSNSDLPTSPLAMEYVNDFDLMKFEVKKEPVETDRIISQCGRLIAGGSLSSTPM
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
:::::::: :::: :::::. :: : : :::
NP_005 STPCSSVPPSPSFSAPSPGS----------GSEQ--------------------KAHLED
70 80 90
120 130 140 150 160 170
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHH--GAHHGAHHPAAAAAYEAFRGPGFAG
:::.:: ..::::::...:::::::::...:. :. : . : : : : : .
NP_005 YYWMTGYPQQLNPEALGFSPEDAVEALISNSHQLQGGFDGYARGAQQLAAAAGAGAGASL
100 110 120 130 140 150
180 190 200
pF1KB9 GGGADDMG------------AGHHHGA--HHAAHHHHAAHHHHHHH--------------
::....:: :. . :: :. :::::: ::::
NP_005 GGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASA
160 170 180 190 200 210
210 220 230
pF1KB9 ------------HHGGAGHGGGAG--------------HH----VRLEERFSDDQLVSMS
::.: :::.: :: .....::::.:::.::
NP_005 GGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFDDRFSDEQLVTMS
220 230 240 250 260 270
240 250 260 270 280 290
pF1KB9 VRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQL
:::::::::: :::::::::::::::::::::::::::::::::.::::: :: .::..:
NP_005 VRELNRQLRGVSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHVLESEKNQLLQQVDHL
280 290 300 310 320 330
300 310 320 330 340 350
pF1KB9 KLEVGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
: :..::..::: ::::::::.. : ..... : :
NP_005 KQEISRLVRERDAYKEKYEKLVSSGFRENGSSSDNPSSPEFFITEPTRKLEPSVGYATFW
340 350 360 370 380 390
NP_005 KPQHRVLTSVFTK
400
>>NP_005452 (OMIM: 166300,608968,617041) transcription f (323 aa)
initn: 931 init1: 510 opt: 576 Z-score: 341.8 bits: 71.6 E(85289): 2.7e-12
Smith-Waterman score: 991; 51.7% identity (61.8% similar) in 377 aa overlap (1-334:1-319)
10 20 30 40 50
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEP-PEAERF---CHRLPP-GSLSSTPL
:::::.:: :::.::::.::::::::.::.::::: .::: : :: : ::.:::::
NP_005 MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 STPCSSVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALED
::::::::::::: :: : : :::
NP_005 STPCSSVPSSPSF---SP---------------------------------TEQKTHLED
70 80
120 130 140 150 160 170
pF1KB9 LYWMSGYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGG
::::.. ...::::::::::::::::::: : . .: . ...:::
NP_005 LYWMASNYQQMNPEALNLTPEDAVEALIGS------HPVPQPLQS--FDSFRG-------
90 100 110 120
180 190 200
pF1KB9 GADDMGAGHHHGAHHAAHHHHA--------------AHHHHHHHH---------------
.::: :: : ::: :: ::::::
NP_005 -------AHHHHHHHHPHPHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQ
130 140 150 160 170 180
210 220 230 240 250
pF1KB9 ----HGGAG-HGGG----AGHHVRLEERFSDDQLVSMSVRELNRQLRGFSKEEVIRLKQK
: : : :. . :: . .:.:::::::::::::::::.::::.:.::::::::
NP_005 LPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQK
190 200 210 220 230 240
260 270 280 290 300 310
pF1KB9 RRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLEVGRLAKERDLYKEKYEKLA
::::::::::::::.:::::.: ::.:: :: .:::::: ::.:::.::: :: : ::::
NP_005 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEKLA
250 260 270 280 290 300
320 330 340 350
pF1KB9 GRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
. : ... . : :
NP_005 NSGFREAGSTSDSPSSPEFFL
310 320
>>XP_011535104 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 686 init1: 430 opt: 456 Z-score: 277.3 bits: 59.2 E(85289): 1.1e-08
Smith-Waterman score: 644; 43.0% identity (60.1% similar) in 316 aa overlap (11-324:3-229)
10 20 30 40 50 60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
:: ::::.::::::::::::::.:: :.. :: ... ::: :
XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSEGR-------PGPPTASLGSTPYS
10 20 30 40
70 80 90 100 110
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSG-KPALEDLYWM
::: ::.: : : ::.: : .:.::.:::.
XP_011 SVPPSPTFSEP------------------------------GMVGATEGTRPGLEELYWL
50 60 70
120 130 140 150 160 170
pF1KB9 SGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGAD
. :..:. :::.:.::.:.: : :.: :. . ::
XP_011 ATLQQQLGAGEALGLSPEEAMELLQGQG----------PVPVD------GP---------
80 90 100 110
180 190 200 210 220 230
pF1KB9 DMGAGHHHGAHHAAHHHHAAHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRE
:: .. :. . :: .::.: ::::: ::::::::
XP_011 -------HG------------------YYPGSPEETGA-QHVQLAERFSDAALVSMSVRE
120 130 140
240 250 260 270 280 290
pF1KB9 LNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLE
::::::: ...:..::::.:::::::::::.:: ::.:::. ::.:. .: .:.. :. :
XP_011 LNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAE
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB9 VGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
:.:::.:::::: . ..:.. .::::
XP_011 VARLARERDLYKARCDRLTS-SGPGSGDPSHLFL
210 220 230
>>XP_011535106 (OMIM: 162080,613750) PREDICTED: neural r (237 aa)
initn: 686 init1: 430 opt: 456 Z-score: 277.3 bits: 59.2 E(85289): 1.1e-08
Smith-Waterman score: 644; 43.0% identity (60.1% similar) in 316 aa overlap (11-324:3-229)
10 20 30 40 50 60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
:: ::::.::::::::::::::.:: :.. :: ... ::: :
XP_011 MALPPSPLAMEYVNDFDLMKFEVKREPSEGR-------PGPPTASLGSTPYS
10 20 30 40
70 80 90 100 110
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSG-KPALEDLYWM
::: ::.: : : ::.: : .:.::.:::.
XP_011 SVPPSPTFSEP------------------------------GMVGATEGTRPGLEELYWL
50 60 70
120 130 140 150 160 170
pF1KB9 SGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGAD
. :..:. :::.:.::.:.: : :.: :. . ::
XP_011 ATLQQQLGAGEALGLSPEEAMELLQGQG----------PVPVD------GP---------
80 90 100 110
180 190 200 210 220 230
pF1KB9 DMGAGHHHGAHHAAHHHHAAHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRE
:: .. :. . :: .::.: ::::: ::::::::
XP_011 -------HG------------------YYPGSPEETGA-QHVQLAERFSDAALVSMSVRE
120 130 140
240 250 260 270 280 290
pF1KB9 LNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLE
::::::: ...:..::::.:::::::::::.:: ::.:::. ::.:. .: .:.. :. :
XP_011 LNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAE
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB9 VGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
:.:::.:::::: . ..:.. .::::
XP_011 VARLARERDLYKARCDRLTS-SGPGSGDPSHLFL
210 220 230
>>NP_006168 (OMIM: 162080,613750) neural retina-specific (237 aa)
initn: 686 init1: 430 opt: 456 Z-score: 277.3 bits: 59.2 E(85289): 1.1e-08
Smith-Waterman score: 644; 43.0% identity (60.1% similar) in 316 aa overlap (11-324:3-229)
10 20 30 40 50 60
pF1KB9 MAAELAMGAELPSSPLAIEYVNDFDLMKFEVKKEPPEAERFCHRLPPGSLSSTPLSTPCS
:: ::::.::::::::::::::.:: :.. :: ... ::: :
NP_006 MALPPSPLAMEYVNDFDLMKFEVKREPSEGR-------PGPPTASLGSTPYS
10 20 30 40
70 80 90 100 110
pF1KB9 SVPSSPSFCAPSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSG-KPALEDLYWM
::: ::.: : : ::.: : .:.::.:::.
NP_006 SVPPSPTFSEP------------------------------GMVGATEGTRPGLEELYWL
50 60 70
120 130 140 150 160 170
pF1KB9 SGYQHHLNP-EALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGGGGAD
. :..:. :::.:.::.:.: : :.: :. . ::
NP_006 ATLQQQLGAGEALGLSPEEAMELLQGQG----------PVPVD------GP---------
80 90 100 110
180 190 200 210 220 230
pF1KB9 DMGAGHHHGAHHAAHHHHAAHHHHHHHHHGGAGHGGGAGHHVRLEERFSDDQLVSMSVRE
:: .. :. . :: .::.: ::::: ::::::::
NP_006 -------HG------------------YYPGSPEETGA-QHVQLAERFSDAALVSMSVRE
120 130 140
240 250 260 270 280 290
pF1KB9 LNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEKCQLQSQVEQLKLE
::::::: ...:..::::.:::::::::::.:: ::.:::. ::.:. .: .:.. :. :
NP_006 LNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAE
150 160 170 180 190 200
300 310 320 330 340 350
pF1KB9 VGRLAKERDLYKEKYEKLAGRGGPGSAGGAGFPREPSPPQAGPGGAKGTADFFL
:.:::.:::::: . ..:.. .::::
NP_006 VARLARERDLYKARCDRLTS-SGPGSGDPSHLFL
210 220 230
352 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 09:31:40 2016 done: Sun Nov 6 09:31:42 2016
Total Scan time: 9.000 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]