FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9817, 305 aa
  1>>>pF1KB9817 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4995+/-0.000895; mu= 14.9473+/- 0.054
 mean_var=82.6142+/-17.441, 0's: 0 Z-trim(106.8): 53  B-trim: 0 in 0/50
 Lambda= 0.141106
 statistics sampled from 9148 (9181) to 9148 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.282), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS6221.1 PEX2 gene_id:5828|Hs108|chr8            ( 305) 2108 438.9 2.4e-123


>>CCDS6221.1 PEX2 gene_id:5828|Hs108|chr8                 (305 aa)
 initn: 2108 init1: 2108 opt: 2108  Z-score: 2328.0  bits: 438.9 E(32554): 2.4e-123
Smith-Waterman score: 2108; 99.7% identity (99.7% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB9 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MASRKENAKSANRVLRISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 WVFLWRFTIYSKNATVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 YDLFRNHHLASFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERLLGIHSVFCKP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GKECALCGEWPTMPHTIGCEHIFCYFCAKSSFLFDVYFTCPKCGTEVHSLQPLKSGIEMS
              250       260       270       280       290       300

            
pF1KB9 EVNAL
       :::::
CCDS62 EVNAL
            




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 19:24:52 2016 done: Fri Nov  4 19:24:53 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]