Result of FASTA (ccds) for
pF1KB9811
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9811, 248 aa
1>>>pF1KB9811 248 - 248 aa - 248 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8076+/-0.000816; mu= 11.7298+/- 0.049
mean_var=68.4405+/-13.304, 0's: 0 Z-trim(106.5): 20 B-trim: 3 in 1/52
Lambda= 0.155031
statistics sampled from 9025 (9033) to 9025 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.277), width: 16
Scan time: 2.310
The best scores are: opt bits E(32554)
CCDS288.1 SFN gene_id:2810|Hs108|chr1 ( 248) 1587 363.8 6.3e-101
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8 ( 245) 1100 254.8 3.8e-68
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2 ( 245) 1094 253.5 9.7e-68
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20 ( 246) 1060 245.9 1.9e-65
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7 ( 247) 1031 239.4 1.7e-63
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22 ( 246) 1012 235.2 3.2e-62
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17 ( 255) 949 221.1 5.8e-58
>>CCDS288.1 SFN gene_id:2810|Hs108|chr1 (248 aa)
initn: 1587 init1: 1587 opt: 1587 Z-score: 1925.4 bits: 363.8 E(32554): 6.3e-101
Smith-Waterman score: 1587; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)
10 20 30 40 50 60
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 VLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 VLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 YEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS28 YEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGG
190 200 210 220 230 240
pF1KB9 EAPQEPQS
::::::::
CCDS28 EAPQEPQS
>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8 (245 aa)
initn: 1098 init1: 789 opt: 1100 Z-score: 1336.8 bits: 254.8 E(32554): 3.8e-68
Smith-Waterman score: 1100; 71.1% identity (89.8% similar) in 246 aa overlap (1-241:1-244)
10 20 30 40 50 60
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR
:.. :.::::::::::::.:::: ::...:.: ::: :::::::::::::::..:..::
CCDS62 MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 VLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFY
:.::::::. ::.:.: .::::::.::::. .:. ::.::.. :: .:..:::.:::
CCDS62 VVSSIEQKT--EGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFY
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFH
:::::::::::::::.::::: :.:....:::::..:::::: ::.:::::::::::::.
CCDS62 LKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
120 130 140 150 160 170
190 200 210 220 230
pF1KB9 YEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEE--
::: ::::.: :::::.::::.:.: ::::.::::::::::::::::::::.:. :.:
CCDS62 YEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEAE
180 190 200 210 220 230
240
pF1KB9 ---GGEAPQEPQS
:::
CCDS62 AGEGGEN
240
>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2 (245 aa)
initn: 1089 init1: 764 opt: 1094 Z-score: 1329.6 bits: 253.5 E(32554): 9.7e-68
Smith-Waterman score: 1094; 71.8% identity (90.8% similar) in 238 aa overlap (1-238:1-236)
10 20 30 40 50 60
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWR
::.. ::::::::::::::.:::. ::...:.: ::: ::::::::::::::::.:.:::
CCDS16 MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSAWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 VLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFY
:.::::::.. :..: ...::::::.::...: ::: :::..:: .: . ::.:::
CCDS16 VISSIEQKTDT--SDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFY
70 80 90 100 110
130 140 150 160 170 180
pF1KB9 LKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFH
:::::::.::::::: :::.:. ::....:::::.::::::: ::.:::::::::::::.
CCDS16 LKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFY
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB9 YEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEGG
::: :.:: : .::::.::::.:.: ::.::::::::::::::::::::::.:.::::
CCDS16 YEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECD
180 190 200 210 220 230
pF1KB9 EAPQEPQS
CCDS16 AAEGAEN
240
>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20 (246 aa)
initn: 1053 init1: 739 opt: 1060 Z-score: 1288.5 bits: 245.9 E(32554): 1.9e-65
Smith-Waterman score: 1060; 67.3% identity (89.0% similar) in 245 aa overlap (1-245:3-245)
10 20 30 40 50
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAA
:... :.::::::::::::.:::: ::...:.:.::: :::::::::::::::..:..
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 WRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRV
:::.::::::. : .:.: .:::::.:.::: .:. :: :::..:: .: . ::.:
CCDS13 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKV
70 80 90 100 110
120 130 140 150 160 170
pF1KB9 FYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSV
:::::::::.:::.:::.::.:. ......:::::..:::::: ::.::::::::::::
CCDS13 FYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 FHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEE
:.::: ::::.: :::::.::::.:.: ::.:.::::::::::::::::::::..: :.:
CCDS13 FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDE
180 190 200 210 220 230
240
pF1KB9 GGEAPQEPQS
: . :
CCDS13 GDAGEGEN
240
>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7 (247 aa)
initn: 597 init1: 597 opt: 1031 Z-score: 1253.4 bits: 239.4 E(32554): 1.7e-63
Smith-Waterman score: 1031; 65.4% identity (89.3% similar) in 243 aa overlap (1-241:2-244)
10 20 30 40 50
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
..: .:.:::.::::::::.:::: ::...: .: :: :::::::::::::::..:..:
CCDS55 MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDA--ESR
::.::::::.. .:.:.: :: ::::.: ::..::. ::.:::..:::. ... ::.
CCDS55 RVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFS
::::::::::::::::::::. . ...:...::.:: .:::..: ::.:::::::::.:
CCDS55 VFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 VFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGE
::.::: :.::.: ::::.::.:.:.: ::.::::::::::::::::::::::.:. .
CCDS55 VFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDD
190 200 210 220 230 240
240
pF1KB9 EGGEAPQEPQS
.:::
CCDS55 DGGEGNN
>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22 (246 aa)
initn: 981 init1: 596 opt: 1012 Z-score: 1230.4 bits: 235.2 E(32554): 3.2e-62
Smith-Waterman score: 1012; 64.5% identity (88.4% similar) in 242 aa overlap (2-241:3-244)
10 20 30 40 50
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
.: .:.:.:.::::::::.:::. ::...: .: :: :.:::::::::::::..:..:
CCDS13 MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSSW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGD--AESR
::.::::::. .:.:.: .:. ::::.: ::. ::. ::.:::. :::. .: ::.
CCDS13 RVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYESK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 VFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFS
::::::::::::::::::.:. :. .......::.::..:::..: ::.:::::::::::
CCDS13 VFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 VFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGE
::.::: :.::.: ::: .::.:.:.: ::.::::::::::::::::::::::.:. :
CCDS13 VFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE
190 200 210 220 230 240
240
pF1KB9 EGGEAPQEPQS
:.::
CCDS13 EAGEGN
>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17 (255 aa)
initn: 927 init1: 927 opt: 949 Z-score: 1154.0 bits: 221.1 E(32554): 5.8e-58
Smith-Waterman score: 949; 60.7% identity (82.8% similar) in 244 aa overlap (2-245:3-245)
10 20 30 40 50
pF1KB9 MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAW
.: .:. .::::::::::..:. :: .. ::. :::::::::::::.:..::.:
CCDS11 MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 RVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVF
:..:::::: ...:.:.: .::::. :::::. .: .: .::.::: :. .::.::
CCDS11 RIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 YLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVF
: ::::::.::::: :::.:.:. ... ::. : ::. :.:::.:::::::::::::
CCDS11 YYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVF
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 HYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEEG
.::: :::..: :::..::.:.:.: ::::.::::::::::::::::::::.: :. :
CCDS11 YYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD-G
190 200 210 220 230
240
pF1KB9 GEAPQEPQS
: .:
CCDS11 EEQNKEALQDVEDENQ
240 250
248 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:09:47 2016 done: Fri Nov 4 19:09:47 2016
Total Scan time: 2.310 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]