Result of FASTA (ccds) for
pF1KB9810
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9810, 247 aa
1>>>pF1KB9810 247 - 247 aa - 247 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5711+/-0.000806; mu= 12.8301+/- 0.048
mean_var=65.1817+/-12.811, 0's: 0 Z-trim(107.5): 14 B-trim: 0 in 0/48
Lambda= 0.158859
statistics sampled from 9591 (9603) to 9591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.295), width: 16
Scan time: 2.320
The best scores are: opt bits E(32554)
CCDS7866.1 BDNF gene_id:627|Hs108|chr11 ( 247) 1652 387.1 5.8e-108
CCDS7865.1 BDNF gene_id:627|Hs108|chr11 ( 255) 1652 387.1 5.9e-108
CCDS41628.1 BDNF gene_id:627|Hs108|chr11 ( 262) 1652 387.1 6.1e-108
CCDS44558.1 BDNF gene_id:627|Hs108|chr11 ( 329) 1652 387.2 7.4e-108
CCDS8538.1 NTF3 gene_id:4908|Hs108|chr12 ( 257) 574 140.1 1.4e-33
CCDS44806.1 NTF3 gene_id:4908|Hs108|chr12 ( 270) 574 140.1 1.5e-33
CCDS882.1 NGF gene_id:4803|Hs108|chr1 ( 241) 496 122.2 3.2e-28
CCDS12754.1 NTF4 gene_id:4909|Hs108|chr19 ( 210) 475 117.4 8e-27
>>CCDS7866.1 BDNF gene_id:627|Hs108|chr11 (247 aa)
initn: 1652 init1: 1652 opt: 1652 Z-score: 2051.8 bits: 387.1 E(32554): 5.8e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:1-247)
10 20 30 40 50 60
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 NMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 NMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 FYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 FYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCT
190 200 210 220 230 240
pF1KB9 LTIKRGR
:::::::
CCDS78 LTIKRGR
>>CCDS7865.1 BDNF gene_id:627|Hs108|chr11 (255 aa)
initn: 1652 init1: 1652 opt: 1652 Z-score: 2051.6 bits: 387.1 E(32554): 5.9e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:9-255)
10 20 30 40 50
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAG
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MFHQVRRVMTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 SRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB9 YKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 YKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB9 SKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIR
190 200 210 220 230 240
240
pF1KB9 IDTSCVCTLTIKRGR
:::::::::::::::
CCDS78 IDTSCVCTLTIKRGR
250
>>CCDS41628.1 BDNF gene_id:627|Hs108|chr11 (262 aa)
initn: 1652 init1: 1652 opt: 1652 Z-score: 2051.4 bits: 387.1 E(32554): 6.1e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:16-262)
10 20 30 40
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLES
:::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MQSREEEWFHQVRRVMTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLES
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 VNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB9 LLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTAADKKTAVDMSGGTVT
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB9 VLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKR
190 200 210 220 230 240
230 240
pF1KB9 IGWRFIRIDTSCVCTLTIKRGR
::::::::::::::::::::::
CCDS41 IGWRFIRIDTSCVCTLTIKRGR
250 260
>>CCDS44558.1 BDNF gene_id:627|Hs108|chr11 (329 aa)
initn: 1652 init1: 1652 opt: 1652 Z-score: 2049.8 bits: 387.2 E(32554): 7.4e-108
Smith-Waterman score: 1652; 100.0% identity (100.0% similar) in 247 aa overlap (1-247:83-329)
10 20 30
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQG
::::::::::::::::::::::::::::::
CCDS44 GCAVYLHVSVEFNKLIPENGFIKFHQVRRVMTILFLTMVISYFGCMKAAPMKEANIRGQG
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB9 GLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEELLDEDQKVRPNEENNKDADLY
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB9 TSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRHSDPARRGELSVCDSISEWVTA
180 190 200 210 220 230
160 170 180 190 200 210
pF1KB9 ADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNPMGYTKEGCRGIDKRHWNSQCRT
240 250 260 270 280 290
220 230 240
pF1KB9 TQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
:::::::::::::::::::::::::::::::::::::
CCDS44 TQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
300 310 320
>>CCDS8538.1 NTF3 gene_id:4908|Hs108|chr12 (257 aa)
initn: 512 init1: 414 opt: 574 Z-score: 716.3 bits: 140.1 E(32554): 1.4e-33
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (40-247:60-256)
10 20 30 40 50 60
pF1KB9 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
..:: ....:. :: . ..:. ::
CCDS85 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB9 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
.: . .: ... : . ::.::...::::: :.:.:.: . .:: . : .:.
CCDS85 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
90 100 110 120 130
130 140 150 160 170 180
pF1KB9 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
.. ..::: ::::: : ::: ::..:.:. : :::: .. .... .:::::::.:.
CCDS85 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB9 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
.:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : ::
CCDS85 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
200 210 220 230 240 250
>>CCDS44806.1 NTF3 gene_id:4908|Hs108|chr12 (270 aa)
initn: 512 init1: 414 opt: 574 Z-score: 716.0 bits: 140.1 E(32554): 1.5e-33
Smith-Waterman score: 582; 45.5% identity (74.2% similar) in 209 aa overlap (40-247:73-269)
10 20 30 40 50 60
pF1KB9 ISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLADTFEHVIEE
..:: ....:. :: . ..:. ::
CCDS44 SLNSLIIKLIQADILKNKLSKQMVDVKENYQSTLPKAEAPREPERGGPA-KSAFQPVIA-
50 60 70 80 90 100
70 80 90 100 110 120
pF1KB9 LLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAANMSMRVRRH
.: . .: ... : . ::.::...::::: :.:.:.: . .:: . : .:.
CCDS44 -MDTEL-LRQQRRYN------SPRVLLSDSTPLEPPPLYLMEDYVGSPVVANRTSRRKRY
110 120 130 140 150
130 140 150 160 170 180
pF1KB9 SD-PARRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLKQYFYETKCNP
.. ..::: ::::: : ::: ::..:.:. : :::: .. .... .:::::::.:.
CCDS44 AEHKSHRGEYSVCDSESLWVT--DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFYETRCKE
160 170 180 190 200 210
190 200 210 220 230 240
pF1KB9 MGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCVCTLTIKRGR
.:.:::::: .::::::.:.:.:::::: ...: .:::.:::::::::.:. : ::
CCDS44 ARPVKNGCRGIDDKHWNSQCKTSQTYVRALTSENNKLVGWRWIRIDTSCVCALSRKIGRT
220 230 240 250 260 270
>>CCDS882.1 NGF gene_id:4803|Hs108|chr1 (241 aa)
initn: 435 init1: 272 opt: 496 Z-score: 620.1 bits: 122.2 E(32554): 3.2e-28
Smith-Waterman score: 496; 36.9% identity (64.3% similar) in 249 aa overlap (1-247:1-239)
10 20 30 40 50 60
pF1KB9 MTILFLTMVISYFGCMKAAPMKEANIRGQGGLAYPGVRTHGTLESVNGPKAGSRGLTSLA
:..:: :.. ... ..: : .:.:. .: . : ..: : . . : :. .. :
CCDS88 MSMLFYTLITAFLIGIQAEPHSESNV--PAGHTIP--QAHWTKLQHSLDTALRRARSAPA
10 20 30 40 50
70 80 90 100 110 120
pF1KB9 DTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEEYKNYLDAA
. . .. . ... . . : : . ::..:.: : : :. .
CCDS88 AA---IAARVAGQTRNITVDPRLFKKRRLRSPRVLFSTQPPREAADTQDLDFEVGGAAPF
60 70 80 90 100 110
130 140 150 160 170
pF1KB9 NMSMRVRRHSD-PA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVSKGQLK
: . : .: :. : .:::.:::::.: :: .:: ::.:..: : :: .: .... .:
CCDS88 NRTHRSKRSSSHPIFHRGEFSVCDSVSVWV--GDKTTATDIKGKEVMVLGEVNINNSVFK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB9 QYFYETKCNPMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKKRIGWRFIRIDTSCV
:::.:::: . . ::::::..:::: : ::...:.:::::.:. .::::::::.::
CCDS88 QYFFETKCRDPNPVDSGCRGIDSKHWNSYCTTTHTFVKALTMDGKQ-AAWRFIRIDTACV
180 190 200 210 220 230
240
pF1KB9 CTLTIKRGR
:.:. : :
CCDS88 CVLSRKAVRRA
240
>>CCDS12754.1 NTF4 gene_id:4909|Hs108|chr19 (210 aa)
initn: 480 init1: 284 opt: 475 Z-score: 595.1 bits: 117.4 E(32554): 8e-27
Smith-Waterman score: 547; 52.0% identity (71.1% similar) in 173 aa overlap (88-247:40-209)
60 70 80 90 100 110
pF1KB9 SLADTFEHVIEELLDEDQKVRPNEENNKDADLYTSRVMLSSQVPLEPPLLFLLEE--YKN
:: . ::.:: .: :::::::: ...
CCDS12 PILLLFLLPSVPIESQPPPSTLPPFLAPEWDLLSPRVVLSRGAPAGPPLLFLLEAGAFRE
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB9 YLDA-ANMSMRVRRHSDPA-RRGELSVCDSISEWVTAADKKTAVDMSGGTVTVLEKVPVS
: :: : : .. :: :::::.:::..: ::: :..::::. : : :: .::..
CCDS12 SAGAPANRSRRGVSETAPASRRGELAVCDAVSGWVT--DRRTAVDLRGREVEVLGEVPAA
70 80 90 100 110 120
180 190 200 210 220
pF1KB9 KGQ-LKQYFYETKCN--------PMGYTKEGCRGIDKRHWNSQCRTTQSYVRALTMDSKK
:. :.:::.::.:. : : ::::.:.::: :.:.. :::::::: :..
CCDS12 GGSPLRQYFFETRCKADNAEEGGP-GAGGGGCRGVDRRHWVSECKAKQSYVRALTADAQG
130 140 150 160 170 180
230 240
pF1KB9 RIGWRFIRIDTSCVCTLTIKRGR
:.:::.:::::.::::: . ::
CCDS12 RVGWRWIRIDTACVCTLLSRTGRA
190 200 210
247 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 19:09:16 2016 done: Fri Nov 4 19:09:17 2016
Total Scan time: 2.320 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]